Marinobacter sp. JH2: MARI_28570
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Entry
MARI_28570 CDS
T06162
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARI_28570 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marj03019
]
MARI_28570 (rhlE)
Enzymes [BR:
marj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MARI_28570 (rhlE)
Messenger RNA biogenesis [BR:
marj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MARI_28570 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Utp25_C
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
QBM18715
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All DBs
Position
3121316..3122629
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AA seq
437 aa
AA seq
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MSFSSLGLSEQLVRATSDQGYDTPSPIQLQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
QRLSEKPRAGKGPRALILTPTRELAAQVHDSVNLYSRYVPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFSNEIRGLAEGLLDNPVQVEVAARNTSAETIKQSVYPVDQSQKTALLSKLVRDN
SWDQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGEKGHALSLVSADEGKLLAGIERL
IKKQLPRKEIEGFEPKNNLPLKPKAKADPSKARSRRPQGGNGKSFGPKPAGRSGGRGRQG
QGEGQGRGGRPAQRHSA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttccctcggtttgtccgagcagctggtccgtgccacttccgatcagggt
tacgataccccgtctcccattcagctgcaggcgattcctgccgttctgtcgggtaaagat
gtgatggcggcggcccagaccggtaccggtaaaacggccggctttactttgcccctgttg
cagcgtttgtctgaaaagccgcgcgcaggcaaaggcccccgcgcgctgattctaacgcct
acccgggagctggctgcgcaggttcacgacagcgtgaacctatacagccgatacgtgcca
accaaagccgccgtggtgtttggtggtgtcaaaatcaatccgcagatgatgaagctgcgc
aaaggtttggacgttctggtggcaacaccgggccgtttgatggacctgtatcagcagaac
gcggtgcgtttcaatgaagtggaaattctggtgctggacgaagccgaccgcatgttggac
atgggctttatccgcgacattcgtaagatccttgcactgttgccagccaagcgtcagaac
ttgttgttttctgctaccttctccaacgaaatccgtggcttggccgaaggcctgctggat
aacccggtgcaggttgaagtagccgcacggaacacctcggctgaaaccatcaaacagtcg
gtttacccggtcgatcagagccagaaaacggcgctgttgagcaagctggtgcgtgataac
agctgggatcaggtactggtcttcactcgcaccaaacacggtgctaaccgcctgacccag
aagctggaacgagacggcattacggccgcggctattcatggcaacaagtcacaaggcgcc
cgtacccgtgcgctggcagactttaaagccggcgaagtgcgtgtgctggtggcaaccgac
attgccgcccgtggcctggacatcaaacagcttccgcaagtggtgaacttcgagctgccg
aacgtacctgaagactacgtgcaccgtattggccggaccggccgtgccggtgaaaaaggc
catgccttgtcactggtcagtgccgacgaaggcaaattgctggcgggtatcgaacgcttg
atcaagaagcagctgccgcgtaaggaaatcgaaggctttgagccgaagaacaacctgccg
ctgaagccgaaagccaaggcggacccgagcaaagcccgtagccgtcgcccacagggtggt
aatggcaagagcttcgggcctaagcctgcaggtcgcagtggtggccgcggtcgtcaaggc
cagggtgaagggcaaggccgcggtggtcgcccggctcagcgccatagcgcctaa
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