Marinobacter sp. JH2: MARI_28870
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Entry
MARI_28870 CDS
T06162
Symbol
rnr_2
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARI_28870 (rnr_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marj03019
]
MARI_28870 (rnr_2)
03016 Transfer RNA biogenesis [BR:
marj03016
]
MARI_28870 (rnr_2)
Enzymes [BR:
marj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARI_28870 (rnr_2)
Messenger RNA biogenesis [BR:
marj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARI_28870 (rnr_2)
Transfer RNA biogenesis [BR:
marj03016
]
Prokaryotic type
tRNA degradation factors
MARI_28870 (rnr_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
IFT20
Motif
Other DBs
NCBI-ProteinID:
QBM18745
LinkDB
All DBs
Position
complement(3153029..3155008)
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AA seq
659 aa
AA seq
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MLNADALNQLRQLKTDIKENKVVFPGTVKSTNGRFGFVALDEGRDVFLPPEEMQKVLPGD
RVNVVEQEADKGKTQGVIDELLETNLTTFVGRYLVKGKGHFVAPETPGINRWIFIPPKER
MGAEPDDFVYCQIHRHPIKDGKGQAKVLRIIGKAGEPGIERAFTLASFDLADSWPENVQQ
QADKLTEESITAAANDREDRTAEPYVTIDSPGTQDMDDALKATPNATGWILSIAIADPTA
LIEPTSPAEQEAYNRATAIYFPGEPLPMLPDSISTRLCSLMPDVPRLVLVCDLQVNNDGS
LGDYSFHQAIIRSKGKLSYELVSHLIEGREDEEINALPDDVSNSLDQLHQVATALRKWRS
EHALLSTDRPEFRLRLDENRRIRLIEPSVQNEAHRLVEECMVAANRCAADFLSQQGKGLF
IQHPGLRDDRADNIRKLLEGYAPHLSDIDAISAEGFKALMKQCEQLDAEVPVKSILSRQL
ARAELSAEPAPHQGMGLAAYTTFTSPLRKFSDYYVHRLIKAALWGAPITPLDKNQLESLQ
ATQFKARQAANSLETWLKADFAKTLTDEPMEGTISRTVPAGFFVRLDCNGLEGFVSCRDL
DGKFGFDPITMRLVHNKNGRIFQIDQRVTVSFVGVDEERRQINFKLKSAVEVPVAKSST
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgacgctctcaatcagttgcgccagctgaaaaccgatatcaaagaaaac
aaggtggtcttccccggaaccgttaagtccaccaacgggcgattcgggttcgtcgccctt
gatgaaggccgggatgtgttcctgccccccgaggaaatgcagaaagtactgccgggtgat
cgggtcaacgttgttgaacaggaagccgacaagggtaaaacgcagggcgtcatcgacgag
ctgttggaaaccaacctgaccacctttgtgggtcgttatctggtcaaaggcaaaggccac
ttcgtggctccggaaacccccggcatcaatcgctggatcttcattccgccaaaagaacgc
atgggcgccgaacccgacgatttcgtgtattgccaaatccaccgtcatccgatcaaggat
ggcaaaggacaggccaaggttttgcggattatcggtaaagccggcgaaccgggcattgaa
cgagcctttacccttgccagcttcgatctcgctgactcatggcccgagaatgtgcagcaa
caggctgacaagctgacagaagagagtatcactgccgctgccaatgaccgcgaagatcgc
accgccgagccctacgtcacgatcgacagcccgggcacacaggatatggacgatgccctg
aaggcaacgccaaatgccaccggctggatattgtcgatcgccattgcggaccctaccgct
ttgatcgagccaaccagcccggccgaacaagaggcttataatcgggccacggccatttac
ttccccggcgagccactgcccatgctgccggacagcatcagcactcgcttgtgttcactg
atgcccgatgtaccgcggctggttctggtgtgcgacctgcaagtaaataacgatggcagc
ctgggtgattacagcttccatcaagcaatcatccggtcaaagggtaagctgagttacgaa
ctggtgtctcacctgatcgaaggccgagaagacgaagaaatcaacgctctgcctgacgat
gtcagcaacagtctggatcagctgcaccaagtcgccacagcgctacgtaagtggcgttct
gaacacgcactgctcagcaccgaccgcccggaattccgcctgcgactggatgaaaaccgc
cgtattcgactgattgaaccgtccgtgcagaacgaagctcaccgcttggtggaagaatgc
atggtggccgccaaccgctgtgccgccgacttcctgagccagcaaggcaagggtttattc
atccagcatcccggcttgcgcgacgaccgtgcggacaacatccgtaagctgttggaaggt
tatgctccgcatctgtccgatatcgacgccattagtgcagagggcttcaaagcattgatg
aaacaatgcgagcaactggacgcagaagttccggtgaagtccatcctgtcacggcagttg
gcgcgggcggaactgagcgcagagcctgcaccgcaccaaggcatggggctggcggcttat
accaccttcacctcgccgctgcgcaagttctcggattactacgtccaccgactgatcaaa
gctgcgctttggggtgcgcccatcaccccgttggacaaaaaccagctggaatcgctgcaa
gcgactcagttcaaggcgcgccaagccgctaactcactggaaacctggctgaaggccgac
ttcgccaaaacactcacggacgaaccgatggaaggcaccatcagccgcacggtaccggct
ggcttcttcgttcgtctggactgtaatgggttggaaggcttcgtcagctgccgggatctg
gacggcaagtttggtttcgatccgattacgatgcgactggtgcacaataaaaacggtcgt
atttttcagatcgatcagcgagtaaccgtcagctttgtcggtgtggacgaagagcggcga
cagatcaactttaaactgaagagtgctgtcgaagtcccagtcgccaaatcgtctacatga
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