Microbacterium arborescens: QUC20_08115
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Entry
QUC20_08115 CDS
T09423
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mark
Microbacterium arborescens
Pathway
mark03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mark00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QUC20_08115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mark03019
]
QUC20_08115
03009 Ribosome biogenesis [BR:
mark03009
]
QUC20_08115
Enzymes [BR:
mark01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QUC20_08115
Messenger RNA biogenesis [BR:
mark03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QUC20_08115
Ribosome biogenesis [BR:
mark03009
]
Prokaryotic type
rRNA processing factors
QUC20_08115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
WJM17288
LinkDB
All DBs
Position
1696450..1698843
Genome browser
AA seq
797 aa
AA seq
DB search
MADDRNDNPTPAESASAVDAAAAELADAVASIDATEEHIDSGRAAEDAAAEPAAGESDGA
EATDAPAVPDEPAAAGESAPAAEPAPAEDQTVYESPAPAAEPEPGDEPAPGDAGPPTAVS
LGLLPAEFVSAVSTALHFYAPELPPLPALPDDGDDDETASSSGPGSSRRRGRRRGGSNGD
DGNDPAPRQRAVELITEPQRIKGSTRLEAKKQRRRDGREAGRRRTVVTEAEFLARREAVD
RVMVVRSKNGRIQIAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGR
GRNAVLYSGEVDWDAVETGNQPRRIELALKSGDRVLVQVTKDPVGHKGARLTSQISLPGR
YLVYVPGGAMNGISRKLPDTERARLKRILKEVLPESSGVIVRTAAEGATEDQLTRDVQRL
TSQWEHISSQLEKIQAPALLHSEPDLLVKIVRDVFNEDFSRMLIQGDEAYATITSYLTGV
APDLLERVEKYEDEQDPFDAFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK
FVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECL
SRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACDVCAGRGVIVHHDPVVKHRGAGS
QNGNGNGNGSARRNGRGGGGATAPAPATGGTHVITEGAKSALAQIAASTIQPTAAEEDAE
LVAVAVEPEAAPVERPKKPRRKKSEPKAPRTEKDLLLDSVLNALPEPKAPGQGRGRRRVT
TAALSGTPVSASPTTED
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatcgcaacgacaatccgacccccgctgagtccgcaagcgcggtagacgcc
gccgcagccgaactggctgacgcagtggcgtcgatcgacgccaccgaggaacacatcgac
agtgggcgggccgcagaggacgccgcagccgagcctgctgcgggcgagagcgacggcgcc
gaggcgaccgacgctcccgcggtaccggatgagcccgccgcggccggcgagtctgcaccg
gccgcggagcccgcaccggctgaggatcagacggtttacgaatctcctgcgcccgctgcg
gagcctgagcccggcgacgagcccgcccccggcgacgcgggcccgccgaccgcggtgtcg
ctcggcctccttcccgcggagttcgtgtcggcggtctcgaccgcgctgcacttctacgcg
cccgagctcccgccgctccccgcgctgccggacgacggcgacgatgacgaaaccgcatct
tcgtcggggccgggcagctctcgtcgtcgcggccgtcgccgcggcggatccaacggcgac
gacggcaacgacccggctccgcggcagcgtgcggtcgagctcatcacggagccgcagcgg
atcaagggctcgacccggctcgaggcgaagaagcagcgccggcgcgacggccgtgaagca
ggccgtcgtcgcaccgtggtcaccgaggccgagttcctcgcacgccgcgaggcggtagac
cgcgtcatggtcgtccgctcgaagaacggtcgtatccagatcgccgtgctcgaggacaac
gttctggtcgagcactacgtcgcccgcaaccaggacgcgtcgctgatcggcaacgtctac
ctggggcgggtgcagaacgtgcttccgagcatggaagccgccttcgtcgacatcggtcgt
ggtcgaaacgccgtgctgtactccggcgaggtcgactgggatgccgtcgagacgggcaat
cagccgcgccgcatcgagctcgcactcaagtccggtgatcgcgtcctcgtgcaggtgacg
aaggaccccgtgggacacaagggcgcccggctcaccagccagatctcgctgcccggccgc
tacctcgtgtacgtccccggcggcgccatgaacggcatctcgcgaaagctccccgacacc
gagcgggcgcggctcaagcgcatcctgaaggaggtcctccccgagtcgtcgggcgtgatc
gtgcgcactgccgctgagggcgcgacggaggaccagctcacgcgggacgtgcagcgactc
acctcgcagtgggagcacatcagctcgcagctcgagaagatccaggcacccgcactgctg
cactccgagcccgatctgctcgtgaagatcgtgcgagacgtcttcaacgaggacttctcg
cggatgctcatccagggtgacgaggcgtacgcgaccatcacgtcgtacctgacgggagtc
gctcctgaccttctcgagcgcgtcgagaagtacgaggacgagcaggacccattcgacgcg
ttccgtgtgacggagcagatcgagaaggctctcgaccgcaaggtctggctgccgtcgggc
ggttcgctcgtgatcgaccgcaccgaagccatgaccgtggtcgacgtgaacaccggcaag
ttcgtcggatcgggcggcaacctcgaggagaccgtcaccaagaacaacctggaggcagcc
gaggagatcgtccggcagctgcgcctgcgcgacatcggcggcatcatcgtcgtggacttc
atcgacatggtgctcgagtcgaaccgtgacctcgtgctgcggcgcctcatcgagtgcctc
agccgtgaccgcacgaagcaccaggtggcggaggtcacctccctcggcctcgtgcagatg
acccgcaagaagctcggactcggcctcctggagaccttcagcgaagcctgcgacgtgtgc
gcgggacgcggcgttatcgtccaccacgacccggtcgtcaagcaccgcggcgcgggctcg
cagaacggcaacggcaacggcaacgggtcggcacgccgcaacggtcggggcggtggcggt
gctacggcgccggctccggccaccggaggcacgcacgtgatcaccgagggtgcgaagtcc
gctctcgcgcagatcgccgcttcgacgattcagcccaccgccgcggaggaggacgccgag
ctcgtcgcagtggcggtggagcccgaggccgcgcccgtcgagcgaccgaagaagccgcgt
cgcaagaagtccgagcccaaggcgccgcgcaccgagaaggacctgctgctcgactcggtg
ctcaacgcgctccccgagcccaaggccccgggccaagggcgtggacggcgtcgagtcacg
acggccgccctcagcggcacccccgtctcggcgtcgccgaccaccgaggactga
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