Microbacterium arborescens: QUC20_09630
Help
Entry
QUC20_09630 CDS
T09423
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mark
Microbacterium arborescens
Brite
KEGG Orthology (KO) [BR:
mark00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mark03019
]
QUC20_09630 (hrpA)
Enzymes [BR:
mark01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QUC20_09630 (hrpA)
Messenger RNA biogenesis [BR:
mark03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QUC20_09630 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
SLFN-g3_helicase
ResIII
AAA_30
NACHT
UvrD-helicase
SRP54
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WJM14547
LinkDB
All DBs
Position
2032569..2036522
Genome browser
AA seq
1317 aa
AA seq
DB search
MSSPAPVITFPPELPVSAARDEIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRTSIA
HTQPRRIAARTVAERIAAEMEVPLGGAVGYKVRFTDQVSADTRVALVTDGILLNEIHRDR
MLRRYDTIIIDEAHERSLNIDFLLGYLRRILPRRPDLKVIVTSATIDPESFAAHFADAQG
APAPIIEVSGRTYPVEVRYRPHDDAGDDESATDDVDGLVAALRELDREPDGDVLVFLPGE
AEIRDAMDAVRSAYARDARPTEVLPLYGRLSAAEQHRVFEPSRVAGVRRRVILATNVAET
SLTVPGIRYVIDAGTARISRYSNRSKIQRLPIEAVSQASAQQRAGRAGRTSPGIAVRLYA
EDDFTSRPEFTEPEILRTSLASVVLQMLALGFGDIADFPFLTPPDSRGVKAAFDLLVELR
AVRRDDKGAWRLTETGREISRLPIDPRFARMLVEARALDVTRDVLAIVAGMSIQDVRERP
EERREEADRLHARFTDPTSDFLTLLNLWNHLQDQQRELGSSAFRRACRAEYLNYVRVREW
FDVHRQLSTLARGDRDRRRRESDERPVVAGAAHPDRVHRAILAGLLSQIGVLDTRSTSNA
RATGGRGGGSKPQRPRAEYRGARGAKFAIFPGSGLRKASPDAVMAAELVETSRLYARTVA
AIDPAWAEELAGDLAHRSMSDPHWSKDAGAAVAAEKVTLFGVEIVPRRRVQLAGRDRELA
RELFLRHALVEGDWNSTHLDKRLTAFERRNLELRRRLEKIEERERRRDILVGDEAVFAFY
DARIPRDVFDVRSFEAWWRDATARTPRLLDMTESDLAGDASGSDERAFPARWRQGDQVLS
LAYRFEPGASDDGVSVVVPLALLASLRPDGFDWQVPGLRDELIAGLLRALPKAIRRHVVP
AADWASRFAEELAADGPESRDGLPARTLREALAARIQRVANQPVTSADFDLERVPAHLSM
SFRAVDERGRPLGSSRDLAELQQRLANRSRASVARSLAKAAPRPGSQPAAAAPAAALGAA
SGSDQRAGIAEQSGLTDWTFGDLPELVDTRVAGGVVRGYPALVDEGTAVTLRIEATPDRA
ERLTRAGVRRLVLLSVPSPATYVLDHLTASEKLALAASPYPSAKALIEDARVAVADAVID
RTAASVRTPAQFQAVRDAFSAAVVDELFQTVSLSARILTLQRDVERAIRKENSMVLLAAL
GDVKQQLAGLVFPGFLSQTGTARLAHLPRYLQGALERVTSLSDNPGRDRQRLTEFERAAT
LYTEAGGTIPPAHDAPPNLRHARWLLEEYRVSLFAQRLGTAEPVSIQRITKMLAGKG
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcgcccgcccctgtgatcacgttcccacccgagctgcccgtcagcgcggcccgg
gacgagatcgcgcgcgccatccgcgaccaccaggtcgtcatcgtcgcgggggccaccggc
tcgggtaagacgacccagctgccgaagatctgcctcgaactcggacgcacgagcatcgcg
cacacgcagccgcgtcggatcgccgcacggacggtcgcggagcgcatcgccgccgagatg
gaagtcccgctcggcggggctgtcggctacaaggtgcggttcaccgaccaggtatccgcc
gacacccgggtggcgctggtcaccgacggcatcctcctcaacgagatccaccgcgaccgg
atgctgcgccggtacgacacgatcatcatcgacgaggcgcacgagcgatcgttgaacatc
gacttcctgctcgggtatctgcgccgcatcctcccccgtcggcccgacctgaaggtcatc
gtgacctcggcgacgatcgaccccgagagcttcgccgcgcatttcgccgacgctcagggc
gcgcccgcgcccatcatcgaggtctcgggtcgcacctatcccgtcgaggtgcgctaccgc
ccccatgacgacgccggcgatgacgagtccgctacggatgatgtcgacggcctggtcgcg
gcgctgcgcgagctcgaccgtgagcccgacggcgacgtcctcgtcttcctccccggtgag
gcggagatccgcgacgcgatggatgccgtgcgctccgcctacgcgagagacgcgcgtccg
accgaagtgctgcccctgtatggtcgcctctcggctgccgagcagcaccgcgtcttcgag
ccctcacgggtcgccggtgtgcggcgccgcgtgatcctcgccaccaacgtcgccgagacg
agtctcaccgtgcccggcatccggtacgtcatcgacgccgggacggcacggatctcgcgc
tacagcaatcgctcgaagatccagcgcctgcccattgaggccgtgtcgcaggcatccgcc
cagcaacgagccggccgtgcgggccgaacctcccccggtatcgccgttcggctctacgcc
gaggacgacttcacctcgcgccccgagttcaccgagccggagatcctgcgcacctcgctc
gcatcggtggtgctgcagatgctcgcgctcgggttcggcgacatcgccgacttcccgttc
ctcaccccgccggactcgcgtggcgtgaaggccgcgttcgacctgctcgtggaactgcgc
gcggtgcgccgcgacgacaagggcgcctggcgcctgacggagaccggccgtgagatctcg
cgcctgccgatcgacccgcgattcgcccgcatgctcgtcgaggctcgcgcactcgacgtg
acccgcgacgtgcttgcgatcgtggccggcatgtcgatccaggacgtacgtgagcgcccg
gaggaacggcgcgaggaagccgaccggctgcacgcccgcttcaccgatccgacgagcgac
ttcctgacgctgctgaacctgtggaaccacctgcaggaccaacagcgcgaactcggctcc
agcgcgttccgccgcgcgtgccgcgccgagtacctgaactacgtccgggtgcgcgagtgg
ttcgacgtccaccgtcagctcagcacgctggctcgcggagaccgcgaccgtcgccgtcgc
gagagcgacgaacgccccgtcgtcgcgggggccgcgcatcccgaccgcgtgcaccgtgca
atcctggcgggcctcctgtcgcagatcggcgtcctcgacacccggagcacctcgaacgcg
cgtgccacgggtggtcggggcggtgggagcaagccgcagcgcccccgcgccgagtaccgc
ggcgctcggggcgcgaagttcgcgatcttccccggctcgggtctgcgtaaagcgtcgccg
gacgccgtgatggccgccgagctcgtcgagacctcgcgtctgtacgcccgcacggtggcg
gcgatcgacccggcgtgggccgaggagctcgccggagacctggcgcaccggtcgatgagc
gacccgcactggtcgaaggatgccggcgccgcggtcgccgccgagaaggtcaccctcttc
ggcgtcgagatcgtcccccgccggcgcgtgcagctggccgggcgtgaccgcgagctcgcc
cgcgagctgttcctgcggcacgcgctcgtcgagggcgactggaactccacgcacctcgac
aagcggctcaccgccttcgagcggcgcaacctcgagctgaggcgacgcctcgagaagatc
gaggaacgcgaacggcgtcgcgacatcctggtcggcgacgaagcggtgttcgcgttctac
gacgcccgcatcccccgcgacgtgttcgacgtccgctcgttcgaagcctggtggcgcgac
gccacggcccgcacgccgcgcctgctcgacatgaccgagagcgacctcgccggtgatgca
tccggtagtgacgagcgcgccttcccggcgcgctggcgccagggcgatcaggtgctttca
ctcgcctaccgcttcgagcccggcgcctcggacgacggcgtcagcgtggtcgtcccgctc
gcactcctcgcctcgctccgacccgacgggttcgactggcaggtgccgggtctgcgcgac
gagctgatcgccgggcttcttcgcgcgctgcccaaggccatccggcggcacgtcgtaccc
gcggccgactgggcgtcgcgcttcgccgaagagctggccgcagacggacccgagtcgcga
gacgggctgcccgcacgcaccctgcgcgaagcgctcgccgcccgcatccaacgcgtcgcg
aatcagccggtcacgtcggccgacttcgatctcgagcgcgtgcccgcgcacctgtcgatg
tcgttccgcgccgtcgacgagcgcgggcgtccgctcggctcgtctcgcgacctggccgag
ctgcagcagcggctcgcgaaccgcagccgggcgtcggtggctcgctcgctcgcgaaggcc
gccccgcgccccggctcgcaacccgccgcagcggcgccggccgccgcgctcggcgccgca
tccggcagtgaccagcgagccggaatcgccgagcagagcggcctgaccgactggacgttc
ggcgacctccccgagctcgtcgacacgagggtcgccggcggcgtcgtgcggggctacccc
gccctcgtcgatgagggaacggccgtcaccctgcgaatcgaggcgacccccgatcgagcg
gagcgcctgacccgcgcaggcgtccggcggctcgtgctgctgtcggtcccgtctccggcg
acgtacgtgctcgaccacctcaccgcgtccgagaagctcgcgctcgcggcctctccctac
ccgtcggcgaaggcgctcatcgaggacgcgcgcgtcgccgtcgcggacgcggtcatcgac
cgcacggcggcatccgtccgcacgccggcgcagttccaggcggtgcgggatgcgttctcg
gcggctgtcgtcgacgagctgttccagaccgtctcgctgagcgcacgcatcctgaccctt
cagcgcgacgtcgagcgggcgatccgcaaagagaactcgatggtgctgctcgccgccctc
ggcgatgtgaagcagcagctggccggcctggtcttccccggattcctctcgcagaccggt
accgcgcggctcgcgcatctgccccgatacctccagggcgcgctcgagcgggtgacctcg
ctgagcgacaaccccggccgcgatcggcagcgtctcaccgagttcgagcgcgccgcgacg
ctctacaccgaagccggcggcacgatcccccctgcccacgatgctcccccgaacctgcgg
cacgcgcggtggcttctggaggagtaccgggtcagcctcttcgcgcagcgtctcggcacg
gccgagcccgtgtcgatccagcgcatcaccaagatgctcgccggcaagggctga
DBGET
integrated database retrieval system
