Microbacterium arborescens: QUC20_09790
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Entry
QUC20_09790 CDS
T09423
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mark
Microbacterium arborescens
Brite
KEGG Orthology (KO) [BR:
mark00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mark03016
]
QUC20_09790
Enzymes [BR:
mark01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QUC20_09790
Transfer RNA biogenesis [BR:
mark03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QUC20_09790
Prokaryotic type
tRNA splicing ligases
QUC20_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CCDC85
Motif
Other DBs
NCBI-ProteinID:
WJM14575
LinkDB
All DBs
Position
complement(2069915..2071084)
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AA seq
389 aa
AA seq
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MEKLSNRLLSWASIIDEKTLDQARTASGMPFIHPHLALMPDAHLGKGATVGSVIPTVGAI
MPAAVGVDIGCGMIAVRTQFTKSQLLGRDLGALREQIERAIPLSAGRDNRKIVATAEPRI
AELEELAEKNEFDPARYAGHWRNQLGSLGSGNHFIEVSVDETDAVWMFLHSGSRGVGNKI
ATHHIGVAQRLAKQWWIDLPDPDLAYLVEGTEEFRRYIRELRWAQHFALLNREEMMDRVA
RQLSETMGGEVEELERINCHHNFTESEKHFGKQVWVSRKGAIQADAGRPGLIPGSMGTAS
YVVSGLGNPLSLNSSPHGAGREYSRSAARRTFTHDQLRAAMAGIEFRDTDAFIDEIPQAY
KPIDRVMDDAADLVEVRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctctcgaacaggctcttgtcgtgggcaagcatcatcgacgagaagactctc
gatcaggctcgcaccgcgtcgggcatgccgttcatccacccgcatctggcgctcatgccc
gatgcgcacctcggcaagggggcgaccgtcgggtcggtcatcccgacggtcggcgcgatc
atgccggctgccgtcggcgtcgacatcggatgcggcatgatcgccgtccgcacgcagttc
acgaagtcgcagctgctcggccgcgacctcggcgcgctccgcgagcagatcgagcgggcg
atcccgctgtcggccggtcgcgacaaccgcaagatcgtcgcgacagccgagccgcgcatc
gccgagctggaggagctcgccgagaagaacgagttcgacccggctcgctatgccggacat
tggcgtaaccagctcgggtcgctcgggtcgggcaaccacttcatcgaggtctcggtcgac
gagaccgacgcggtctggatgttcctgcactccggttcgcggggagtgggcaacaagatt
gcgacgcaccacatcggagtcgcgcagcggctcgccaagcaatggtggatcgacctgccc
gaccccgacctggcgtacctcgtcgagggcacggaggagttccgccgctacatccgcgag
ctccggtgggcgcagcacttcgcgctcctcaaccgcgaggagatgatggaccgcgtcgct
cgtcagctgtccgagacaatgggcggcgaggtcgaggagctcgagcgcatcaactgccac
cacaacttcaccgagagcgagaagcacttcggcaagcaggtgtgggtgtcgcgcaagggc
gcgatccaggcggatgccggccggcccggcctcatcccgggatcgatgggcacggcgtcg
tacgtcgtctccgggctcgggaacccgctgtcgctcaactcgtcgccgcacggcgcgggt
cgggagtactcacggtcggccgcgcgccggaccttcacgcacgaccagctgcgtgcggcg
atggcgggcatcgagttccgcgacacggatgccttcatcgacgagatcccgcaggcgtac
aagccgatcgaccgggtgatggacgacgccgccgacctcgtcgaggtgcggcacacgctg
cgtcagctggtcaacgtgaagggcgattga
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