KEGG   Microbacterium arborescens: QUC20_12825
Entry
QUC20_12825       CDS       T09423                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
mark  Microbacterium arborescens
Pathway
mark03420  Nucleotide excision repair
mark03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mark00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    QUC20_12825
   03430 Mismatch repair
    QUC20_12825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mark03400]
    QUC20_12825
Enzymes [BR:mark01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     QUC20_12825
DNA repair and recombination proteins [BR:mark03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     QUC20_12825
   MMR (mismatch excision repair)
    Other MMR factors
     QUC20_12825
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor Viral_helicase1 AAA_12 AAA_30 AAA_11 EcoR124_C ResIII AAA_16
Other DBs
NCBI-ProteinID: WJM15154
LinkDB
Position
complement(2709817..2712285)
AA seq 822 aa
MPEPIKPVIVGSAASVRPGASSGERPDADLLEGLNPPQREAVTYRGPALLIVAGAGSGKT
RVLTHRIASLLRGREAWPSQILAITFTNKAAGEMRERVQQLIGDSAQGMWISTFHSACVR
ILRREAQQFGFTKNFTIYDSGDSRALIKRLVKEHEADAFGLTPAGVQSRISKLKNELADA
DSYARQANMSDPAERVFVELFGAYQSALQRANAFDFDDLIAQTVYLFRAFPHVADVYRKR
FRHILVDEYQDTNHAQYALIHELTRPVQGQGGDAFSSGGMMIFEPESAPEVEAASLTVVG
DSDQSIYAFRGADIRNITEFERDYPGAKVVLLEQNYRSTQNILSAANAVISNNFDRKDKK
LWTDVGAGDAIVGFTGYSQHDEAQFVADEIEALHRSAVPYSQMAVFYRTNSQSRALEEIF
IRAAIPYKIMGGTKFYDRAEIKDALAYVVAVANPSDELAVRRILNRPRRGIGDVTETSIA
RYAAEQQITFRDALANASALGVGPKIQAAIAQLDAVLAEASEIMLPSSGEIAPPTAVTEG
LTVLLNKSGYMDALRASRDPQDEARLENLDELIAVTREFARNNPEGTILDFLTEVALVAD
ADDLDDASGTVSLMTMHTAKGLEYDAVFVTGVEEDLIPHRISANEPGGPQEERRLFYVAL
TRARKRLHLSLAMTRAQFGEVSAAMPSRFLQEIPHDLIDWRQSPGDVNSRGGMQSRALNG
RRSGTSGGGFGGSGKRYGDDLVPLPRREKSSDIAKFANRIPAKVRDNGDLELGPGDRIKH
DDFGEGRVDAVTGEGAKRVAHVRFDSAGPKKLLIKIAPIVKL
NT seq 2469 nt   +upstreamnt  +downstreamnt
atgccagagcccatcaagcccgtcatcgtcggctccgccgcatccgtgcgccccggcgcc
tcctccggcgagcgtcccgacgccgacctcctcgaggggctgaacccaccccagcgcgaa
gcggtgacctaccgcggccccgcgttgctgatcgtcgcgggcgccgggtcgggcaagacc
cgcgtgctcacgcaccgcatcgcgtcgctcctgcgtggccgcgaggcgtggccgagccag
atcctcgcgatcaccttcaccaacaaggccgccggcgagatgcgcgagcgtgtgcagcag
ctgatcggtgacagcgcgcagggcatgtggatctcgaccttccactcggcgtgcgtgcgg
atcctgcgccgcgaggcgcagcagttcgggttcaccaagaacttcacgatctacgactcg
ggagactcgcgcgcgctcatcaagcgtctcgtgaaagagcacgaggccgatgccttcggg
ctcaccccggcgggtgtgcagagtcgcatctccaagctcaagaacgagctcgccgacgcc
gactcctatgcgcgccaggcaaacatgtccgaccccgcagagcgcgtgttcgtcgagctc
ttcggcgcctatcagtccgcgctccagcgggccaacgccttcgacttcgacgacctcatc
gcccagacggtctaccttttccgagcgttcccgcacgtcgccgacgtctaccgcaagcgg
ttccggcacatcctcgtcgacgagtaccaagacaccaaccacgcccagtacgcgctgatc
cacgagctgacccgtcccgtccaggggcagggcggagacgcgttctcgtcgggcggcatg
atgatcttcgaacccgagtcggcgcccgaagtcgaggcggcctcgctgaccgtggtcggc
gactccgaccagtcgatctacgccttccgcggcgccgacatccgcaacatcaccgagttc
gagcgcgactatcccggcgcgaaggtcgtgctgctcgagcagaactaccgctcgacgcag
aacatcctctcggccgcgaacgccgtcatctcgaacaacttcgaccgcaaagacaagaag
ctctggacggatgtcggcgcgggcgacgcgatcgtcggcttcaccggctactcgcagcac
gatgaggcccagttcgtggccgacgagatcgaggcgctgcaccgttcagccgtgccttac
tcgcagatggcggtgttctaccggacgaactcgcagtcgcgtgcgctcgaagagatcttc
atccgcgcggcgatcccgtacaagatcatgggcggcaccaagttctacgaccgtgccgag
atcaaggatgccctggcatacgtcgtcgccgtggcgaacccctccgacgagctcgcggtg
cgccgcatcctgaaccggccgcggcgcggcatcggcgacgtcaccgagacgtccatcgcc
cggtacgccgccgagcagcagatcaccttccgcgacgcgctcgccaacgcttcggcgctg
ggcgtgggcccgaagatccaggccgcgatcgcgcagctcgacgccgtgctcgccgaggcg
tccgagatcatgctgccgagctcgggcgagatcgccccgccgacggccgtgaccgagggc
ctgaccgtgctgctgaacaagtccggctacatggatgcgctgcgcgcgagccgtgacccg
caggacgaagcgcgcctcgagaacctcgacgagctgatcgccgtgacgcgcgagttcgcg
cggaacaaccccgagggcaccatcctcgacttcctcaccgaggtcgctctcgtcgccgac
gcggacgacctcgacgacgcgtccggaaccgtctcgctgatgacgatgcacacggcgaag
gggctcgagtacgacgccgtgttcgtcaccggtgtggaggaagacctgatcccgcaccgc
atctcggcgaacgagcccggtgggccgcaggaggagaggcgattgttctacgtcgccctc
acccgtgcccgcaaacgcctgcacctctcgctcgccatgacccgcgcacagttcggcgag
gtctcggccgcgatgccgagtcggttcctgcaggagatcccgcatgacctgatcgactgg
cgccagtcgccgggtgacgtgaactcgcgtgggggcatgcagtcgcgtgcgctcaacggg
cggcggtcgggcacttccggcggtgggttcggcggctcgggcaagcgctacggcgacgac
ctcgtgccgctgccccggcgcgagaagagcagcgacatcgcgaagttcgccaaccgcatc
ccggcgaaggtgcgcgacaacggcgacctcgaactcgggcccggcgaccgcatcaaacac
gacgacttcggcgaagggcgggtcgacgccgtcacgggcgagggagccaaacgcgtcgca
catgtgcgtttcgattcggccggcccgaagaagctgctcatcaagatcgcgccgatcgtc
aagctgtaa

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