Marinobacterium sp. LSUCC0821: HH196_02230
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Entry
HH196_02230 CDS
T08388
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marl
Marinobacterium sp. LSUCC0821
Pathway
marl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH196_02230 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marl03019
]
HH196_02230 (recQ)
03400 DNA repair and recombination proteins [BR:
marl03400
]
HH196_02230 (recQ)
Enzymes [BR:
marl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH196_02230 (recQ)
Messenger RNA biogenesis [BR:
marl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH196_02230 (recQ)
DNA repair and recombination proteins [BR:
marl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH196_02230 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
HTH_23
HTH_28
HTH_7
ResIII
FeoC
Motif
Other DBs
NCBI-ProteinID:
QJD70592
LinkDB
All DBs
Position
440324..442450
Genome browser
AA seq
708 aa
AA seq
DB search
MLDSARHQLLHTFGFSEFRDPQGEVVETLLSGQDALVIMPTGGGKSLCYQLPSLVRPGTG
VVVSPLIALMQDQVSALSQLGIKAGCLNSAIDFEQIQSTEQMLLNGELDLLYIAPERLLQ
PRTLALLQRAKLALFAIDEAHCVSQWGHDFRPEYLQLGQLSELFPGVPRVALTATADART
QQEIVDRLGLGSGRVFIKGFDRPNIRYRIMQKDRAREQLLNFIRTEHAQDAGIVYCMSRK
RVEDTAAWLSERGFNALPYHAGLSAQLREHHQHRFLTEDNVIMVATIAFGMGIDKPNVRY
VAHLDLPKSVEAYYQETGRVGRDGQAANAWMVYGLQDVIFQRQMLEAGQAPAEQKRIERQ
KLEAMLGLCEITSCRRQVLLSYFGESEHQPCGNCDNCIDPPEVWEGTEVARKALSAVYRS
GQLFGVNAVIDILLGEHNDRSHERGHDKLSVWGIGKELDRNAWRSVFRQLVARGYLQVTA
DHGTLYLAEQCRPLLKGEEQIELRKDKRKLRTSTSSSKSRKPEMQLDAEDFKLWEALRAC
RKTLADEQDDPPYVIFHDATLMEMVERKPTSSMQLRRISGIGDRKLDLYGEAFLEVINEA
LSEDKAKEVDYQKEEVLQLYRIGMSVEQISAKVHLSPQQLMNILAEWIGAGAISLTEVVE
LPLTEISQIEQEIITSAAVNGASLKPVFDHFAGAYSLGVLRCVQAAMQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgttagattccgcccgccatcaacttcttcacacctttggtttttcagagtttcgcgac
ccgcaaggcgaggtggtagaaactttgctgtctggccaagatgcgcttgtcatcatgcca
accggtggtggtaagtcactatgttatcagttgccatctcttgttcgtccgggaactggt
gtggttgtttcgccgcttatcgctttgatgcaggatcaagtgagtgcgctctcgcagttg
ggtattaaggctggttgtctcaactcagctatcgactttgagcagattcaatcgactgaa
cagatgctgcttaacggtgagttggatcttttatatatagccccagaacgactacttcag
ccgcgtaccttggctctgttgcagcgtgcaaaattagcgctctttgcaattgatgaggcg
cactgtgtatcgcagtgggggcacgactttagacctgagtatctccagctaggtcagctt
tcagaacttttcccaggtgtgccccgcgttgcgcttactgcaactgcagatgctcgtact
caacaggagattgttgatcgtcttggtttgggttctgggcgtgtattcattaaaggtttt
gaccgccccaacattcgttaccgcatcatgcagaaggatagggcacgcgaacagctactt
aactttatccgtacagaacatgcccaagatgcagggattgtctactgcatgtcgcgtaaa
cgggtcgaagatactgctgcctggttaagtgagcgaggatttaacgccctgccataccat
gcaggcctatctgctcaactgcgtgaacaccatcagcatcgcttcttaacagaagataac
gtcattatggtggcaactattgcgttcggtatgggtatcgataagcctaatgtgcgatat
gtggctcacttggatcttccgaaatctgttgaagcctactaccaagagacagggcgtgta
ggtcgtgatggtcaagcagctaacgcttggatggtctatggtctgcaggatgtgattttt
cagcgccagatgttagaggcgggccaagcgcctgctgaacagaaacggatagagcgacaa
aaacttgaggcgatgttggggttgtgtgaaatcaccagttgtcgtcgacaggtgctgctc
tcctattttggcgaatcagaacatcagccctgtggtaattgtgataactgtattgacccg
ccagaggtgtgggaaggtactgaagttgctcgcaaagctttgtcggcggtctatcgcagt
ggtcagttgttcggtgtaaatgcagttatagatattctattgggcgaacataacgatcgc
tcgcatgagcgtggccacgataaactgtctgtctgggggattggcaaagagttggaccgc
aacgcctggcgttcggtatttcgccagctcgtggcgcgtggttaccttcaggttacggct
gatcatggcaccctctatcttgccgagcagtgtcgacctcttcttaaaggtgaagagcag
attgagcttcgcaaagataagcgtaagttacgcacttcgacatctagctcgaaatcccgt
aagcctgagatgcaactcgatgctgaggactttaagctttgggaagcactgcgagcttgt
cgaaaaacgcttgccgatgagcaggatgaccctccatatgtgatattccatgacgcaacg
ttgatggagatggttgagcgtaagccgacctcctcaatgcaactgcgacgtatctctggg
attggcgatcgtaagctcgatctttatggcgaggcgttccttgaagtgatcaatgaagcg
ctctcggaagataaggccaaagaggttgattatcagaaagaggaggtgctgcagctctac
cgtatcggtatgagtgtggagcagatctcagcaaaggtgcacctttcaccccaacagctt
atgaatattcttgctgagtggatcggtgctggcgctatctcactcaccgaagttgttgag
ttgccattgactgaaatctctcagatcgagcaggagattatcaccagtgcggctgttaac
ggagcatcattaaagcctgtattcgatcattttgctggcgcctatagtctgggtgtgttg
cgttgtgtgcaggcggcgatgcagtag
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