Marinobacterium sp. LSUCC0821: HH196_08855
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Entry
HH196_08855 CDS
T08388
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
marl
Marinobacterium sp. LSUCC0821
Pathway
marl03420
Nucleotide excision repair
marl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH196_08855 (uvrD)
03430 Mismatch repair
HH196_08855 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marl03400
]
HH196_08855 (uvrD)
Enzymes [BR:
marl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH196_08855 (uvrD)
DNA repair and recombination proteins [BR:
marl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH196_08855 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HH196_08855 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
AAA_11
DUF2937
Motif
Other DBs
NCBI-ProteinID:
QJD71791
UniProt:
A0A858QZL3
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All DBs
Position
1822102..1824300
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AA seq
732 aa
AA seq
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MDVTHIIDSLNDAQRDAVTADISNLLVLAGAGSGKTRVLVHRIAWLIEAEQISPYSILAV
TFTNKAAKEMRGRIESLLNINVQGMWVGTFHGLAHRLLRSHWQDAGLRENFQIMDSDDQL
RLVKRLCKEMGLDDSRWPPKQIQWFINAQKDEGLRSHHLERTGDLVQDTLIRVYEAYEQA
CDRGGMIDFGELLLRCLELLRDKNPQLLAHYRDRFRYVLVDEFQDTNAIQYAWLRLLCQG
EHKLMAVGDDDQSIYGWRGARIENIQNLETHFSNLRTIKLEQNYRSTSNILTAANGVISN
NFGRLGKELWTDGNQGEPISLYAAFNEQDEARFIVDRIAAWIDEGNRRDESAILYRSNAQ
SRVLEEMLIRAGIPYRIYGGQRFYDRLEIKNALAYLRLVSNRDDDTAMERVINVPVRGIG
TSTIEKIRDYAREQGISMWRASNEIVEHNALPARANNALQGFLDLVNRLDTDTEETSLQE
QTDHAIKLSGLIAHHEKEKGEKAQSRIENLEELVTAARQFEQQWSLEENPEFPSVLSAFL
DQAALDAGEAQADQFTDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHSMSAEEPGRLEEE
RRLCYVGITRAMQKLFLTYAESRRLHGQDNYNRPSRFIQEIPMETIEEVRLNATVRRPYS
SGSDVEFTPSKAFASEVPDTQLSLGQRVNHPKFGEGMVINFEGSGPKARVQVNFDYEGTK
WLVVGFANLTAL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgttacccatatcatcgactccctcaacgacgcacaacgtgatgctgtgacggcg
gatatcagtaacctcttggtgctggcgggagcgggttccggtaaaacacgtgtgcttgtt
caccgtattgcatggcttatcgaagccgagcagatctcgccctactccatccttgccgta
acctttactaacaaggccgctaaagagatgcgaggccgtatcgaaagcctacttaacatc
aacgtccaaggaatgtgggtaggcaccttccacggtttggcgcaccgcttacttcgttct
cactggcaggatgctgggctgcgagaaaacttccagatcatggatagcgatgaccaactg
cggttggttaagcgactctgtaaagagatgggtttagatgattcacgctggcctccaaag
cagattcaatggtttattaatgctcaaaaagatgaggggcttcgcagccatcacttagag
cgcaccggcgacctagttcaagacacgctgatccgtgtctatgaagcgtatgagcaggca
tgtgaccgaggcggcatgatcgatttcggtgaactactgctgcgctgtttagagttactt
cgcgataaaaatccacagctactcgcccactatcgtgaccgtttccgatacgtgcttgtc
gacgagtttcaggataccaacgccattcagtacgcctggctacgacttctttgtcagggt
gaacacaagctgatggcggtgggtgatgatgaccaatcaatctacggctggcgtggcgcg
cgcattgagaatatccaaaacctagagactcactttagcaacctgcgcaccattaagctg
gagcagaactaccgctcaaccagtaatattttgacggctgccaatggtgtcatcagcaat
aacttcggccgcttgggtaaagagctctggaccgatggcaatcaaggtgaaccgattagc
ctctatgccgcctttaacgagcaagatgaggcgcgttttatagtcgatcgcatcgctgct
tggatagacgaaggcaatcgcagagacgagagtgccattctctaccgctccaacgcccag
tcacgcgtgctcgaggagatgctgattcgggcgggtatcccataccgcatctatggtggc
caacgcttctatgatcgtttggagatcaaaaacgcgctggcatacctgcgcctagtctct
aaccgagatgatgacaccgcaatggagcgtgtcatcaatgttccagtgcgcggcattggc
accagtactatcgagaagattcgcgactatgcgcgtgaacagggtatctcgatgtggcgc
gcgagtaatgagatcgtcgagcacaatgcacttcccgcaagagccaataatgctctgcag
ggttttttagatctcgttaatcgactcgatacagacaccgaagagacatctcttcaagag
cagaccgaccacgcgattaaactctctggccttatcgctcaccacgaaaaggagaaggga
gagaaagcgcaatcacgtatagagaacttagaagagcttgtgacagctgcccgccagttt
gagcaacagtggtctctggaagagaatccagagttcccatcagtcctatctgcattctta
gaccaagccgctttggatgctggcgaagcacaggcggatcagttcaccgattcggtacag
ttgatgactctgcactccgccaaaggcttggaattcccactagtatttcttgcaggcatg
gaagagggtctgttcccgcacagcatgtctgcagaggagcctggtcgtctcgaagaggag
cgccgcctctgttatgtaggcatcacacgcgccatgcagaaactcttcctaacctacgct
gagagtcgtcgcctgcacggacaagataactacaaccgcccttctcgctttatccaagag
attccaatggagacgatagaagaggtgcgtttgaatgccaccgttcgccgcccctactca
agcggctccgatgtggagttcaccccatctaaagcctttgccagcgaagtacccgacacc
cagctcagtttaggccaacgcgttaaccaccctaaatttggtgagggcatggtcatcaat
tttgaaggctcgggtcctaaagcacgcgtacaggttaacttcgattacgaagggaccaag
tggctggttgttgggtttgcaaatctaaccgcgctttaa
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