Marinobacterium sp. LSUCC0821: HH196_11235
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Entry
HH196_11235 CDS
T08388
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
marl
Marinobacterium sp. LSUCC0821
Pathway
marl03030
DNA replication
marl03430
Mismatch repair
marl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
marl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH196_11235 (dnaE)
03430 Mismatch repair
HH196_11235 (dnaE)
03440 Homologous recombination
HH196_11235 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marl03032
]
HH196_11235 (dnaE)
03400 DNA repair and recombination proteins [BR:
marl03400
]
HH196_11235 (dnaE)
Enzymes [BR:
marl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HH196_11235 (dnaE)
DNA replication proteins [BR:
marl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HH196_11235 (dnaE)
DNA repair and recombination proteins [BR:
marl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HH196_11235 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
CcmE
SSB
Motif
Other DBs
NCBI-ProteinID:
QJD72234
UniProt:
A0A858R0P8
LinkDB
All DBs
Position
2298148..2301642
Genome browser
AA seq
1164 aa
AA seq
DB search
MSDAKFVHLRAHSEFSLFDGLVRVKELVKQAAAEKMPAVALTDQTNLYALVKFYKAALGA
GVKPICGVDFWVVDDEDQAAEPFQLTLIVQNGQGYRNLMELVSQAYAEGQAIDPERALIF
KSWLAPKAAGLIALSGGRKGDIGRALLAGSEDISERLAFWQALFPNAFYLELSRTGRPDE
ERLIHASVELARTTGLPVVATNEVMFVREDDFDAHEARVCINQGRTLDDPSRPREYTDQQ
YFRSTAEMVELFSDIPSAIANTVEIAKRCNIEIELGIYYLPRFPIPEGVLMDDYFRKVSE
VGLEERLDFLMDRESPDFAEKRKPYDERLKFELDIIIQMGFPGYFLIVMDFIKWAKDNGI
PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVID
YVARTYGRDAVSQIITFGTMAAKAVVRDVARVQGKPFGLADRLSKLIPFEVGMTLNKAWE
QEDALREFVNGSEEAQEIMEMAYKLEGVTRNVGKHAGGVVIAPTKLTDFSATYCDSEGQG
LVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWALETINRTRAEKGEEPLQIEGIDLEDPTV
YDLLKRAETTAVFQLESSGMKDLIRRLLPSRFEDIVALVALFRPGPLQSGMVDDFINRKH
GRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMAKQRHSFIEGSSAQGIDETLSGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKT
HYPAPFMAAVMSSDMQNTDKVVTFIEECRQMKLKVLLPDVNLSEFKFTVSPAQEVICGLG
AVKGVGEGPVEAIMEARKSGPFKDLFDFCQRVGSKRLNKRVLESLVRCGAVDALGPNRAV
LWASISAALQAADQDARNQDAGMFDLFGESEEVISADPYEPFMGAHEWSDKERLTGEKDT
LGLYVTGHPIDQYESELKHFVSRKLVELQPARGRPQKMAGLVVDLRVKKTKRGENLCFVT
LDDRSARIDVSLFGETYDEARRLIQKDQVIVVEGEVATDDYNGGLKVRGQQVLGVAEARI
RYAQSLKIKTTEKSLAGRRIRELQDVLKSAKAIQQGVPVVLDYQCGDAQGRIQLGPKWVV
TPTDDLMLALRELFGNNEVELEYV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctaagtttgttcatcttcgcgcccactcagagttctcgctgtttgatgga
ttggtgcgtgtaaaagagttagtaaagcaggctgctgcagaaaaaatgccagccgttgct
ttgactgatcaaacaaacctttatgctctcgtaaaattctataaagcggctttaggggcc
ggtgttaagccgatttgtggtgtcgatttttgggtcgtcgatgacgaagatcaagccgct
gaacctttccagttaaccctgatcgtgcagaacggccaaggctatcgcaacctgatggag
ctggtctcgcaagcctatgcagaggggcaggcaatagacccagagcgagcgcttattttt
aaaagctggttggcgcctaaagcggctggactcattgccttatctgggggccgtaagggt
gatataggtcgtgccctgttggcaggctcagaggatatatctgagcgtttagccttctgg
caagctcttttccccaatgccttctaccttgaattatcgcgtaccggtcgcccagatgaa
gaacgcctgattcatgcaagtgtggagcttgcacgcactacaggtttgccagttgtggct
accaatgaggtgatgtttgtccgtgaggatgatttcgatgctcacgaggcgcgggtatgt
atcaaccaagggcgtactcttgatgatccaagccggccacgtgaatataccgatcagcaa
tattttcgctctactgctgagatggttgagctcttttcggatatcccctcggccattgcc
aatacggtagagatcgctaagcgctgtaatatcgagattgaactgggtatctactacctg
cctcgcttcccaatacctgaaggggtattgatggatgactacttccgcaaagtctctgaa
gttggtttggaagagcgtctcgatttcctaatggatcgcgagtcgcctgactttgccgag
aaacgaaagccctacgatgagcgtcttaagtttgagctcgatatcatcattcagatgggt
ttcccaggctacttccttatcgtcatggacttcatcaagtgggcgaaggataacggcatt
ccagtcggtcctggtcgtggttctggtgccggctctttggtggcctatgcactgaaaatt
accgatctagatccacttgagtatgatctgcttttcgaacgtttcttgaacccagagcgt
gtatcgatgcctgacttcgatatcgacttctgtatggataaccgcgatcaggtgattgac
tatgtagcgcgtacctatggtcgtgatgcggtgtcacagattatcaccttcggtaccatg
gctgctaaagcggtagtgcgtgacgtggctcgagttcagggcaaacccttcggtcttgct
gaccgcctctctaagcttatccccttcgaagttgggatgacgttgaacaaagcttgggag
caagaggatgcgcttcgcgagtttgtgaacggtagcgaagaggcgcaagagatcatggag
atggcctacaaactcgagggcgttactcgaaatgtaggtaagcacgctggtggtgtcgtg
attgcaccgaccaagctaacagacttttctgcaacctactgtgactctgaaggtcagggc
ctggttactcagtttgataagaacgatgttgaagaggctggcctcgttaagttcgacttc
ttgggtctacgaactcttacgatcattgattgggccttagagacaatcaatagaacccgt
gccgagaagggcgaagagccattacagattgaaggtatcgatcttgaggatcctaccgtc
tacgatctgctaaaacgggccgagacgaccgcagtattccagttggagtcgagtggcatg
aaagatctgattcgtcgtcttttgccgtcgcgctttgaggatatcgtcgcactggtggca
ctgttccgcccaggtccgttgcaatcgggcatggttgatgactttatcaaccgtaaacac
ggccgtgcagagatggcctggccgcaccctgattaccagttagatagtctccagcccgtc
cttgagccaacctacggcatcatcctgtatcaggaacaggttatgcagattgcccaggtg
atggcaggttataccttaggtggcgcggacatgctccgtcgtgctatgggtaagaaaaag
ccagaagagatggctaagcagcgccactctttcatcgagggctctagtgcgcaagggatt
gatgagactctctcgggtaacatctttgatctggttgaaaaatttgcgggctacggcttc
aacaagtcgcactcagccgcgtatgcgctggtctcttaccaaacagcttggctgaaaacg
cactaccctgcgccgtttatggcggcagttatgtcatctgatatgcagaacaccgataag
gtcgtgacctttatcgaagagtgtcgccagatgaagttaaaggtgctgctgccagacgta
aacctctccgaatttaaatttaccgtaagccccgctcaggaagtgatctgtggcttgggt
gctgtgaaaggggtgggtgaaggtcctgttgaagcgatcatggaagcgcgtaagtcaggc
ccatttaaggatctgttcgacttctgtcagcgtgtaggctcaaaacgtcttaataagcgc
gttttggaatcacttgttcgctgtggtgctgttgatgctttagggcctaatcgcgctgta
ttgtgggcgtcgatctctgctgcactgcaagcggctgaccaagatgcgcgtaatcaagat
gcaggtatgtttgacctctttggcgaatcggaagaggtgatctccgcagatccttacgag
ccatttatgggggcgcatgagtggagtgacaaagaacgtcttactggcgagaaagatact
ctgggcctctatgtgacagggcacccgatcgatcaatatgagtcagaattaaaacacttt
gtgtcgcgcaaacttgttgagctgcagccagcgcgtggtcgaccacaaaagatggcaggt
ttggttgttgatctgcgtgtgaagaagacaaagcgtggcgagaacctctgttttgttaca
ctagatgatcgaagcgcgcgtatcgatgtcagcctttttggtgaaacctacgatgaggcg
agacgactgattcagaaagaccaggtgatcgttgttgagggagaagttgccacagatgat
tacaatggtgggcttaaagtacgaggtcagcaggtgctgggtgtcgcggaagcacgcatt
cgttatgctcaatcgctaaagattaaaacgactgaaaaatcactagcgggtcgcagaatt
cgtgagctgcaggatgttcttaagagtgcaaaagcgattcagcagggtgtgcctgtggtg
ctcgattatcagtgtggagatgcgcaagggcgtatccagcttgggcctaagtgggtggtg
acacctacagatgatctgatgctggcgctgcgtgagctatttggaaataacgaagtcgaa
cttgaatacgtctga
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