Maribacter sp. 1_2014MBL_MicDiv: YQ22_00215
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Entry
YQ22_00215 CDS
T04570
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
marm
Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ22_00215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marm03019
]
YQ22_00215
03009 Ribosome biogenesis [BR:
marm03009
]
YQ22_00215
Enzymes [BR:
marm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YQ22_00215
Messenger RNA biogenesis [BR:
marm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YQ22_00215
Ribosome biogenesis [BR:
marm03009
]
Prokaryotic type
rRNA helicases
YQ22_00215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APA62902
LinkDB
All DBs
Position
41552..43336
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AA seq
594 aa
AA seq
DB search
MTKFEALGLEKSLLDAITDMGFETPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
LIQKIDSDSRTTQGLILSPTRELCLQITKEMQAYSKYERNINVVAIYGGASITEQARQIK
RGAQIIVATPGRMKDMISRRLVDISKIDYCVLDEADEMLNMGFMEDIKDILSGTPNDKST
WLFSATMPREVATIAKKFMHSPQEITVGAKNSGASTVQHEYYVVGGRDRYPALKRLADTN
PDIFSVVFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEQRKIRAIENK
INQKFISKKIPTGMEICEIQLYHLANKIKDTKVNDEVDTYLPAINDVLEGIDREELIKKI
VSVEFTRFFNYYNKSKDLNSSDSGRDRDNGKAEIPTSGSVRYFVNVGERDGYDWMSLKDF
IRDTVGLGQEDVFKVDVKESFSFFNTEAEVTQQILDKFTDFKVDGRFVNVEVSKNPGGGG
GGRRRSGGGGGFKGKRNARKDGGSQSKGRRRDRSESSAPNSGKRRSNKRKGNFF
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtttgaagcactgggactagaaaagtccttattagatgctattactgatatg
ggttttgaaaccccatcagaagtacaagaaaaagcaatcccaattttattggaaagtgaa
accgacctagttgcccttgcgcaaacaggtaccggtaaaacagccgcttttggttttcca
ttaattcaaaaaatagatagtgacagtagaaccacacaaggtttaatactttcacctact
cgtgagctttgcttacagatcaccaaagaaatgcaagcgtattctaaatacgagcgcaat
attaatgtagttgccatttatggtggtgctagcattacagaacaagcaagacaaataaaa
aggggtgctcaaattatcgtagctacacccggtagaatgaaagatatgatcagcagacgc
cttgttgacatatctaaaattgactactgtgtacttgatgaggcagatgaaatgttgaac
atgggctttatggaagatatcaaagatattctttccggtacacctaacgacaaatctact
tggttgttctctgcaacaatgccaagagaagtggcaaccattgccaaaaaatttatgcac
tctcctcaagagattacggtaggtgctaaaaattctggtgcttcaacggtacaacatgaa
tattatgttgttggcggtagagatcgttaccctgcacttaaaagattggcagatacgaat
cctgatatattttcggttgttttctgtagaacaaaacgtgatactcaaaaagtagctgag
aaattaatcgaagatggttacaatgcaggtgcactacacggagatctaagccaaaaccaa
agagatttggtaatgaactctttccgtaaaaaacaaattcagatgttggtagctacagac
gttgctgcccgtggtatagatgttgatgacattacacatgttatcaattaccaattacca
gacgaaattgaaacgtatacgcaccgtagcggtagaaccggtagagcaggtaaatccggt
atctctatggttattgttacacgtagcgagcaacgtaagatccgtgctattgaaaataag
atcaaccagaaattcatatccaaaaaaattcctacgggaatggaaatctgtgagattcaa
ttatatcacttagcaaataaaattaaggacactaaagttaatgacgaagtagacacctac
ttgcccgcaattaacgatgttcttgaaggtatagaccgtgaagaattgatcaagaaaatt
gtatctgtagaattcacaagattcttcaattactataacaaatctaaagatttaaactct
tctgacagtggtagagatcgtgataacggcaaagcagaaataccaactagtggttctgtt
cgttatttcgtgaacgttggtgaaagagatggttacgattggatgtctttaaaagacttc
attagagataccgttggtctaggtcaagaagatgtatttaaggttgatgttaaggagagt
ttttctttcttcaacactgaagcagaagttactcaacaaattttagacaagtttacagac
tttaaagttgacggacgttttgttaacgtagaggtatccaaaaacccaggcggtggcggt
ggcggccgacgcagaagcggcggcggtggcggcttcaaaggcaagagaaatgctagaaaa
gatggtggttcccagtctaaaggaagaagaagagacagaagtgaatctagcgctccaaac
tccggaaaacgaagaagcaacaaaagaaaaggtaatttcttttag
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