Maribacter sp. 1_2014MBL_MicDiv: YQ22_00905
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Entry
YQ22_00905 CDS
T04570
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
marm
Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ22_00905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marm03019
]
YQ22_00905
Enzymes [BR:
marm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YQ22_00905
Messenger RNA biogenesis [BR:
marm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YQ22_00905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
APA63027
LinkDB
All DBs
Position
195895..197196
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AA seq
433 aa
AA seq
DB search
MTFKELGLAEPILKALEAEGYTHPTPIQEQSIPILLKGKDLLGVAQTGTGKTAAFGIPIL
HQLYEGISLSQNKRKIKALIVTPTRELAIQIAESFTAYGKYTGLRNTVIFGGVKQGKQVN
ALRGGVDILIATPGRLLDLMNQGFISFRDLEHVVLDEADQMLDMGFIHDIKKIIAKLPPK
RQSLFFSATMPKDIVELSRKMLGDFERVTIKPEQATAEKVEQGVYFVSKPNKPKLLIHII
KENPESTLIVFSRTKHGANKIVKKLDQAGIRSAAIHGNKSQTARQKALSAFKEGDLKVLV
ATDIAARGIDVEDLSLVVNYDLPNVSETYVHRIGRTGRANASGTALSFCDKEERPYLRDI
EKLIKQSVPRMPEHQFVDEDTPQDTGSQPAQQQRKQGNSRNKNRNRPGGNNFRGKNNRNS
SRPKKRTDSSRSE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaactcggcttagccgaacctatccttaaggcattagaggctgaagga
tatactcaccctactccaattcaagaacaatccatacccatattactgaaaggcaaagat
ttattgggcgttgcacaaacgggaaccggtaaaacggccgcatttggtattcctatccta
catcaattatatgaaggtataagtcttagccagaataaaagaaaaattaaggcgctgata
gtaacacctacccgggaacttgccattcaaatagccgaaagttttacggcgtacggaaaa
tacacaggcctacgtaataccgttatttttggcggagtaaaacagggtaagcaagtaaac
gcccttagaggaggcgttgatatattaattgctactcccggtcgcttattagacctaatg
aaccaaggttttatttctttcagagatttagagcacgtagtacttgatgaagctgaccaa
atgctggacatgggctttattcatgatatcaagaaaatcatcgcaaaattgcctcctaaa
cgacagtcattattcttttcggcaactatgccaaaagacattgttgagctttctagaaaa
atgttgggtgattttgaacgcgttaccattaagccagaacaagctacagcagagaaagtt
gaacaaggggtatattttgttagcaagcctaacaaaccaaaactgcttatccatatcatt
aaagagaaccctgagagtacgcttattgttttctccagaactaagcatggtgccaataaa
attgtaaagaaattagaccaagcaggtatacgttctgcagccatacacggtaataaatcg
caaactgcaagacaaaaggcactaagtgcttttaaagaaggagatcttaaggttttggtt
gcaaccgatattgccgcaaggggaattgatgtagaagacctttcattggttgtaaattat
gatttaccaaacgtatccgaaacgtatgttcaccgtataggcagaacaggtagggcaaat
gcaagtggtacggcactttctttttgtgacaaagaagaaagaccctacttacgtgatatc
gagaaattgattaaacaatctgtacctcgcatgccagagcatcaatttgtagatgaagat
actccgcaagatacgggcagtcaaccggcacaacaacaaagaaaacaaggcaactcccgt
aataaaaacagaaacaggcctggtggtaacaactttagaggtaagaataataggaattcg
agcagacctaaaaaacgaacagattctagcagaagcgaatag
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