Maribacter sp. 1_2014MBL_MicDiv: YQ22_13835
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Entry
YQ22_13835 CDS
T04570
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marm
Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YQ22_13835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marm03019
]
YQ22_13835
03400 DNA repair and recombination proteins [BR:
marm03400
]
YQ22_13835
Enzymes [BR:
marm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YQ22_13835
Messenger RNA biogenesis [BR:
marm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YQ22_13835
DNA repair and recombination proteins [BR:
marm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YQ22_13835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
APA66399
LinkDB
All DBs
Position
3276814..3278997
Genome browser
AA seq
727 aa
AA seq
DB search
MDLHSSLKKYFGFSQFKGLQEEVIKNVLRQNNTFVIMPTGGGKSLCYQLPALMQEGTAII
VSPLIALMKNQVDAIRGVSSENGIAHVLNSSLNKGEIKQVKQDITNGVTKLLYVAPESLT
KEENVEFLRSVTISFVAVDEAHCISEWGHDFRPEYRNLKSIVERLGDNIPIIGLTATATP
KVQEDIIKNLGIGGATLFKASFNRPNLFYEVRTKTENIEADIIRFVKQNSGKSGIIYCLS
RKKVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEDVDVVVATIAFGMGIDKPDV
RFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPVAEQEIGNA
LLQEVVAYAETSMSRRKFMLHYFGEEFDEVNGEGADMDDNTRNPKEKEEAKDGVEKLLKV
VTGTSEKFKSKEIVNTLRGKSNAIISSHKTNEKEFFGIGSDKDKGYWMALIRQTLVAGLL
RKEIEQYGVLHVTDSGKEFLKKPSSFMMTKDHVYNAENDNAIVGAAKSGGIADEKLLKQL
KDLRKGQAKKLGVPPFVVFQDPSLEDMALKYPISHEELLNVHGVGEGKAKKYGKPFIAFI
NTYVSENEIIRPDDLVVKSTGANSALKLYVIQNVDRKLPLSDIASAKGLEIPELIKEMEQ
IVYSGTKLNLNYWIDEILDEDQQEEIHDYFLEADSDNLEEAMTEFDGEYEEEELRLYRLK
FISEVAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atcgatttacattcctcattaaaaaaatattttgggttttctcagtttaaaggacttcaa
gaagaggtaattaaaaatgttttaagacagaataatacgtttgtaattatgcctaccggc
ggtggtaaatcgctttgctaccaattacctgcgttaatgcaagaaggtaccgcaattatt
gtatctccacttattgctttaatgaagaatcaagtagatgccatacgtggtgtatcttct
gagaacggaatagcacatgtgctcaattcatcattgaacaaaggtgaaataaaacaggta
aagcaagatatcacaaacggcgttacaaaacttttatatgttgctccagagtcattgaca
aaagaagagaatgtagagtttttgcgctcggttactatttcttttgtagcggtagacgaa
gcgcattgtatctctgaatgggggcatgattttagacctgagtatagaaacctaaaatct
attgttgaacgtttgggcgataatattcctattataggacttaccgctacggctacacct
aaagtacaggaagatatcataaaaaatttaggaattggtggagccactttgtttaaggca
tctttcaatagacccaatttgttttatgaggtacgtaccaaaacggagaatattgaggcg
gatatcatccgttttgtaaaacaaaattcaggtaaatccggtattatatattgtctaagc
cgaaaaaaggtagaagaattggctcaggttttacaggtaaatggtgtaagtgccgtgccg
tatcacgccggttttgatgctaaaactagatctaaataccaagatatgttcttgatggaa
gatgtagatgtggttgtggccactattgcttttggtatgggtatagacaagccagatgtt
cgttttgttatacatcatgatattcctaaaagtatagagagttattaccaagaaacgggt
agggcaggccgtgatggtggcgaaggtcattgtttggcgtattactcttataaggatata
gagaagcttgagaaatttatgtccggtaaaccggtggcagaacaagagataggaaatgcg
ctgttgcaagaagttgtagcctatgcagaaacctcaatgtctagacgtaagtttatgctt
cattattttggtgaggaattcgacgaggttaacggtgaaggggcagatatggatgacaac
accagaaacccaaaagaaaaagaagaggctaaggatggtgtagaaaagctattaaaagtg
gtgaccggaactagtgaaaaatttaaatcaaaggaaattgtaaataccttaagaggtaag
agcaatgcaataatatcatctcacaaaaccaatgaaaaggaattttttggtattggttct
gataaagataaggggtattggatggccttaatacgccaaacattggttgcgggacttttg
agaaaagaaatagagcaatacggtgtacttcatgtaactgatagtggtaaggagttttta
aagaaaccttcttctttcatgatgaccaaagatcatgtgtacaatgccgaaaatgataat
gctattgtaggagctgctaaatctggcggaattgcagatgagaaacttttaaaacaatta
aaagatcttagaaaaggtcaagcaaagaaattgggagtaccgccgtttgtggtctttcaa
gatccttctctagaagatatggcccttaaatatcctatttcccatgaagagttgcttaat
gttcatggtgtaggtgaaggtaaggccaaaaaatatggaaagccttttatcgcttttatt
aatacatacgtttctgaaaatgaaataattagaccggatgatcttgtggtaaagagtacc
ggtgcaaattctgctctaaaattgtatgtgatacagaatgtagataggaaattaccgttg
tctgatattgcatcggcaaaaggacttgaaatacctgagttgatcaaggaaatggagcag
atcgtctatagcggaacaaagttgaatttaaactattggatcgatgagattttagacgaa
gatcaacaagaagaaatacatgattatttcttagaggcagatagtgataatcttgaagaa
gccatgacagagtttgatggtgagtacgaggaagaagaattacgtttgtatagattgaaa
tttattagtgaggtggctaattaa
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