Marinitoga sp. 1137: LN42_08915
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Entry
LN42_08915 CDS
T04633
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
marn
Marinitoga sp. 1137
Pathway
marn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
marn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LN42_08915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marn03021
]
LN42_08915
Transcription machinery [BR:
marn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN42_08915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
SWIRM
TxDE
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
APT76479
LinkDB
All DBs
Position
1801662..1802921
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AA seq
419 aa
AA seq
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MADKDLMKTIEEIGNLEIGEVSEGQEYVKARKRKSSDKKPKTFEKMVKDLVKKAKKNNMV
LTYEDIDKSLPAELDTELIEKIYEALENEGIMIDDGTQLDDESLNEIEEVMAAEGAAAID
LMDYLGDGETQIFDNMSLKDPIKVYLKEIGKIKLLTPQREKRLAKKAQEGNKKARDELIK
ANLRLVISIAKKYIGRGLSFLDLIQEGNIGLIKAVNKFDYKKGFKFSTYATWWIRQAITR
AIADQARTIRIPVHMVETINKFNKIIREYLQEHGEYPSPEKLAELTGKPVEKVNEILLTA
RETISADSPLGASDEDDSTIGDFIADDTLDKPAEVAMKMLLREELEKILDTLQPREAMVL
KMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSSMLGKEL
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
gtggcagataaggatttgatgaagaccattgaggaaataggaaatctggagattggcgaa
gttagcgaagggcaggaatatgtaaaagcccgaaagagaaaatcctcagacaaaaagcca
aaaacctttgaaaaaatggtaaaggatcttgttaaaaaagctaagaagaacaatatggta
ttaacgtatgaggatattgataaatcacttcctgctgaactggatacagaattaatagaa
aagatatatgaagcacttgaaaatgaaggaataatgatagatgatggtacccagcttgat
gatgaaagtttaaatgaaatagaagaagtaatggcagctgaaggagctgctgcaattgat
ttaatggattatttaggggatggagaaactcagatttttgacaatatgtcattaaaagat
cctataaaggtttatctaaaagaaatagggaagattaagttgttaacacctcaaagggaa
aaacgattggcaaaaaaagctcaagaaggtaataaaaaagcaagagatgaattgataaaa
gctaatttaaggcttgttatatctattgcaaaaaaatatataggaagaggattatccttt
ctggatttgattcaggaaggaaatataggattaataaaagcggtaaataagtttgattat
aagaagggatttaaattcagtacatatgcaacatggtggattagacaggctataacaaga
gctattgctgatcaggcaagaactataagaatcccagtgcatatggttgaaacaataaac
aaattcaataaaattatcagagaatatttgcaggaacatggtgaatatccttcaccagaa
aaacttgcagaattaacaggaaaaccagttgaaaaggtaaatgaaatccttttaacagca
agggaaacaatatctgctgactcaccgcttggagcatcagatgaagatgattcaacaata
ggtgattttatagcagatgatacattggataaaccagcagaagttgctatgaaaatgtta
ttgagagaagaacttgaaaaaattcttgatacattgcagccaagagaggcaatggtattg
aaaatgagatatggccttcttgatggtaaggtaaagactcttgaagaggttggacagtat
tttaatgtaacaagagaaagaataagacagattgaagttaaggcattgagaaagttaaga
catccaagcagaagcgctcaattaaaagaattaagttctatgcttggaaaagagttataa
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