Marinitoga sp. 1137: LN42_09765
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Entry
LN42_09765 CDS
T04633
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
marn
Marinitoga sp. 1137
Pathway
marn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN42_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marn03019
]
LN42_09765
03009 Ribosome biogenesis [BR:
marn03009
]
LN42_09765
Enzymes [BR:
marn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN42_09765
Messenger RNA biogenesis [BR:
marn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN42_09765
Ribosome biogenesis [BR:
marn03009
]
Prokaryotic type
rRNA helicases
LN42_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Helicase_C_2
CobA_CobO_BtuR
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APT76632
LinkDB
All DBs
Position
1979601..1981202
Genome browser
AA seq
533 aa
AA seq
DB search
MEKLVKFEDLGLSESTLKALKKKGFEEPTPIQEKVIPILLQEGIDVIGQAQTGTGKTAAF
GLPLIEKLEPSKKVKALILTPTRELAIQVAEEINSLKGRKKLNILPIYGGQSIENQISRL
KKGIDIVVGTPGRILDHIRRKTLDLKHVSYVILDEADEMLDMGFIDDVEEILSNTPEKKQ
ILLFSATMPSRILKLAKKYMSNYKIISVKPEQLTTELTEQIYFEVNESDKFEALCRIIDI
EPEFYGLVFCRTKVDVDTVSNRLIDRGYSAEALHGDLSQYQRERILRKFKTKRANILVAT
DVAARGIDISDLTHVINYSLPQNPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLFIKR
ISKSDIKKKRIPKIKDVIESKKNRIKTEINNILESETYENYLELANEMLENRNANEVLAA
VLKYAFQDELDERNYNEIREVKGKSFVDKKGKTRLFVALGKDDGITKEKILKLIKDYTKL
DNVRLRDVRILDKFSFITVSFEDAEIILESFKKKRRGRKPIIAKAKEKSRKAE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctagtaaagtttgaggatttaggattatcagaaagtacattaaaggcgtta
aagaaaaaggggtttgaggaaccaacaccaattcaggaaaaggttataccaattctttta
caggaaggtattgatgtaattggtcaggcgcagactggaacaggtaaaacagcagcattt
ggattaccgttaattgaaaaattagaaccttcaaaaaaggtaaaggctttaattttaact
cctacaagggaattggctattcaggttgcagaggagattaattctttaaaaggaagaaaa
aagttaaatattcttcctatttatggtggacaatcaatagaaaaccaaatttcaagactt
aaaaaaggtattgatatcgtagttggaacaccgggaagaatattggatcatattagaaga
aaaacattggatttaaaacatgtttcttatgtaattcttgatgaagcagatgagatgctt
gatatgggatttatagatgatgtagaggaaatactttcaaatacaccagaaaaaaagcaa
atacttttattctcagctacaatgccatcaagaattttaaagcttgcaaaaaaatatatg
agcaattacaagataatttctgtaaaaccagaacaattaacaacggaattaacagagcag
atatattttgaggttaatgaatcagataaatttgaggcgttatgtagaattatagatata
gaaccagagttttacggtcttgtattctgtagaacaaaggtagatgttgatactgtttca
aacagacttattgataggggatatagtgcagaggcattacatggagatttatcccaatat
caaagagaaagaattttaaggaaattcaaaacaaagagagcaaatattcttgtagcaaca
gatgttgcagcaagaggtattgatatttcagatttgacacatgtaataaattattcattg
cctcaaaatcctgaatcgtatgttcatagaattggaagaacaggaagggcaggaaaagaa
ggaacagctattacttttgttacaccagaagaatatagaaagttattgtttataaaaaga
atttcaaaaagcgatataaagaaaaagagaattcctaaaataaaggatgttatagaatca
aagaaaaatagaataaaaacagaaataaataatatccttgaaagcgaaacatatgaaaac
tatcttgaattagcaaatgaaatgctcgaaaatagaaatgcaaatgaagtacttgcagca
gtattaaaatatgcttttcaggatgaacttgatgaaagaaattataatgaaattagagaa
gttaaaggaaaatcatttgttgataagaaaggtaaaacaagattatttgtagcccttggt
aaagatgacggaatcacaaaggaaaaaatattaaaattaataaaagattatacaaaactt
gataatgttagattaagagatgtaaggatactcgataaattttcttttattactgtgtct
tttgaagatgcagagattatacttgaatcttttaaaaagaaaagaagaggaagaaaacca
ataattgcgaaagcaaaagaaaaaagcagaaaggcggaataa
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