Marivirga arenosa: QYS47_20515
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Entry
QYS47_20515 CDS
T10278
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
marp Marivirga arenosa
Pathway
marp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYS47_20515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marp03019
]
QYS47_20515 (rnr)
03016 Transfer RNA biogenesis [BR:
marp03016
]
QYS47_20515 (rnr)
Enzymes [BR:
marp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QYS47_20515 (rnr)
Messenger RNA biogenesis [BR:
marp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QYS47_20515 (rnr)
Transfer RNA biogenesis [BR:
marp03016
]
Prokaryotic type
tRNA degradation factors
QYS47_20515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
RNase_II_C_S1
Rrp44_S1
WSLR
RcpB
Motif
Other DBs
NCBI-ProteinID:
WNB17347
UniProt:
A0AA52EXH0
LinkDB
All DBs
Position
complement(3231400..3233565)
Genome browser
AA seq
721 aa
AA seq
DB search
MSKKRNKKGPKRVKKPIKSIPELKNEVQQILDFNLHKSYTVRNIAKAIGSNTAEAKRLID
KVLIELLNEGKIEKASRASYVSNKEPEFIIGKVDHVNPRLAYIISAEREDDIIVKTDNLK
GALHNDTVKVVVIKKNRDGREEGKVIEIVERAKTKFVGRIDKSVRYAFMIPDSRYIHTDF
FILHDKLGGAKHQDKVIAEITSWGGQDRKPEAKVVKVLGPAGENEAEIHSIMAEFELPME
FPEAVIKESEQISDKMPDKEISKRRDMRETTTFTIDPENAKDFDDAISFKKLKNGNYEIG
IHIADVTYYVQPGTLLEEEAFHRATSVYLVDRTIPMLPERLSNGLCSLRPNEDKFTFSAV
FELDQKGGIHNQWFGRTVTHSDRRFTYEEAQAVIETGVGDHAEELTTLNNIAKKLKETRF
KHGAIAFESVEVKFKLDENGKPLGVIPKVRKDAHKLVEEYMLLANRKVAEFVATQKKGDQ
KLTFVYRQHDYPDPEKLSTFSMFAKRFGHELEIEEKAVAKSLNSLMNEIQGKPEQNVLES
LAIRSMAKAKYTTKNSFHFGLAFQYYTHFTSPIRRYPDVMVHRLLQHYLDEGKSVNAEEY
ESKCLHSSEMEKRASDAERASIKYKQVEFMASVEDKAFDGLVTGVTEWGIFVEIIETKCE
GMVRLVDMTDDYYEFDEKNYRVIGQNNKRMITLGDPVTVRVKATDIDKRTIDLEFCEKEE
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaagaaataaaaaaggacctaaaagggttaaaaagccaataaagagtata
ccagaacttaaaaatgaagttcagcaaatattggattttaatcttcataaatcgtataca
gtaagaaatattgccaaagctataggaagcaatactgctgaggctaaaagattaatagat
aaggttttaatagaattattaaacgaagggaaaattgaaaaagcttcccgcgcgagttat
gtttcgaacaaggagcctgaatttataattggaaaagttgatcatgttaatcctagatta
gcttatataatatctgctgagcgagaagacgatatcattgttaaaactgataatctgaaa
ggcgctttgcataatgatacagtcaaagtcgtagtcattaagaaaaacagagatggtagg
gaagaaggaaaagtaattgaaatagtggaaagagctaaaactaaatttgtaggtagaata
gacaagtctgttcgctatgcatttatgattcctgacagtcgctatatccacactgatttc
tttatcctacatgataaacttggaggtgctaaacaccaagataaagtgattgctgaaatt
actagctggggtgggcaggatagaaagcctgaagctaaagttgtgaaagttttaggaccg
gctggagaaaatgaggctgagattcactcaataatggcggaatttgaactgccaatggaa
tttccagaagcagttatcaaagaatcagagcagatcagtgataaaatgccagataaagaa
atttctaaaagaagggatatgcgtgaaactacgactttcactatcgatcctgagaatgca
aaagattttgatgatgccatctccttcaagaaactaaagaatggtaattatgagatcggt
atccacatagcggatgttacgtattatgttcaacccgggacattattagaagaagaagca
ttccacagagccacttcggtttacttagtggatagaaccattccaatgctaccggaaaga
ttatcaaacggactgtgttcacttcgaccaaatgaagataaatttactttttctgccgtt
tttgaattagatcaaaaaggagggattcataatcaatggtttgggagaactgtgactcat
tctgacagaaggtttacttatgaggaggcgcaagcagttattgaaactggagttggtgat
catgctgaagaacttactactctaaataatattgcgaaaaagcttaaggaaacccgattt
aagcacggggccatagcatttgaatcagttgaagtgaaattcaagttagatgaaaatgga
aagccattgggagttattccaaaagttaggaaggacgcccataaattggtggaggaatat
atgctgttagccaatagaaaagtggcggagtttgtcgctacccagaaaaaaggagatcaa
aaattgacttttgtttatcgtcagcacgattatcctgatccagaaaagctttctaccttt
tctatgtttgccaaaagatttggtcatgaactagaaattgaagaaaaggcggttgcaaaa
tcattgaactcattaatgaatgaaattcaaggaaaaccagagcagaatgtattagaaagc
ttagctattcgatcaatggctaaggcaaaatatactactaaaaactcatttcattttgga
ttagcttttcaatattatactcattttacttctcctattagacgttatcctgatgtaatg
gtgcatagactattacaacattatttagatgaaggaaagtcagtaaatgctgaagagtat
gaaagcaaatgtttacattcttcagaaatggagaaacgagcatctgatgctgagcgtgct
tctatcaagtataagcaagttgaattcatggcttctgttgaggataaagctttcgatgga
ttagtaacaggggttaccgaatgggggatatttgtagaaatcattgaaaccaaatgcgaa
ggtatggttcgtttggttgatatgacggatgattactatgaattcgatgaaaagaattac
cgtgtaattggtcagaataataagcgcatgataaccttgggtgatcctgtgaccgtaaga
gtaaaagcgactgatatcgataaaagaactatcgatttagagttttgcgagaaagaagaa
gtataa
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