Marinagarivorans cellulosilyticus: MARGE09_P0326
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Entry
MARGE09_P0326 CDS
T07868
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
marq
Marinagarivorans cellulosilyticus
Pathway
marq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
marq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MARGE09_P0326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marq03021
]
MARGE09_P0326
03400 DNA repair and recombination proteins [BR:
marq03400
]
MARGE09_P0326
Enzymes [BR:
marq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MARGE09_P0326
Transcription machinery [BR:
marq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MARGE09_P0326
DNA repair and recombination proteins [BR:
marq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MARGE09_P0326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCD96127
UniProt:
A0AAN1WEJ9
LinkDB
All DBs
Position
455475..459701
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNILKNQGQADEFDGIRIGLSSPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRDRMAHIELAAPCAHIWFLKSL
PSRIGLLLDMTLRSIERVLYFESYVVVDPGMTTLERGQLLTDEQYFEAMEEFGDDFDAKM
GAEAIQRLMMDIDLDAEAQMLREEIPNTNSETKIKKLSKRLKLVEAFINSGNKPQWMVLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVTGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRERVNGLGEGMAFSDAQEVSRAFYAG
KVHLQSRIKCRINDIIMSEDGETEETKKLVETTVGRILLWEIVPDGVPFELINRNMVKKA
ISTVINFCYRIVGLKATVIFADQLMYMGYDFSTKSGSSIGVNDFQIPDEKAELIGRAEAE
VKEIETQYASGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISTEPVINKAGEEEKQASFN
SVFMYADSGARGSPAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTDRGLTMTPVIEGGDIIESLGDRIL
GRVIAQDVVRPGSDEILVPAGTIIDEKWVERVEHMAIDEVIVRSAINCETRHGICAQCYG
RDLARGHRANVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNVQIKQDGTIRL
HNIKTVSREDGSLVAVSRSGEIAVADATGRERERYKIPYGAVISAKEGAEVAGGAIVAKW
DPHTHPIITEMTGKVILSGMEDGLSVRRQQDAITGLSSIEIMDPSERPSAGKDLKPAVTL
VDAEGNELYLPNTNQPAHYMLPNKSILSLANGDMVSIGDVIARIPQEGSKTRDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKRRLVITPPNGEVMEDGSTHYEVLIPKHR
QLTVFEGEAVTKGEVVSDGPSNPHDILRLKGVAALADYITNEIQDVYRLQGVKINDKHIE
VIVRQMLRKVEITEMGDSDFVKGEQAEFVRVLEQNEKLRAEGKQPARYVRELLGITKASL
ATESFISAASFQETTRVLTEAAVTGKVDTLRGLKENVVVGRLIPAGTGLAYHKERRRKRE
QVEEVVTETVSAAEVEAALTEALRSSND
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgctgaacattttgaaaaaccaagggcaagcggacgagtttgacggtatc
cgtattggtttatcatcaccagaaatgatccgctcttggtcatttggtgaagttaaaaaa
cccgaaaccatcaactaccgtacttttaagcctgagcgtgaaggcttgttttgtgccaag
atttttggcccagtaaaagattacgagtgcttgtgtggtaagtacaaacgcatgaagcat
cgcggcatcatttgtgaaaaatgtggtgttgaagtgactttggcgaaagtgcgtcgcgac
cgtatggcgcacattgaactcgcagcaccttgtgcgcatatctggttcttgaaatcattg
ccaagccgtatcggtttgctgcttgatatgaccttgcgtagcatcgagcgcgtgttgtat
ttcgaatcttatgttgttgtcgaccctggcatgaccacgcttgagcgcggccaattgctg
acagacgagcaatacttcgaagcgatggaagagtttggtgacgactttgatgccaaaatg
ggtgccgaagctattcagcgcctaatgatggatatcgatttggatgccgaagcgcaaatg
ttgcgcgaagaaattccgaacaccaattccgaaaccaaaattaaaaagctttctaagcgt
ttgaagttggttgaagcctttatcaactctggcaataagccgcagtggatggtacttgaa
gctttaccggttcttccgccagatcttcgtccgttagtgccattggacggtggtcgtttt
gcgacttcggatcttaacgatttataccgtcgtgttatcaaccgtaacaaccgcttgaag
cgcctattagaccttaatgctccagacattatcgtgcgcaacgaaaagcgcatgctgcaa
gagtctgttgatgcgctgttagataacggtcgtcgcggtcgcgccattaccggttctaac
aagcgtcctttaaaatcacttgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacttacttggtaagcgtgtggattactctggtcgttctgtaattgtgaccggtcctact
ctacgtttgcatcagtgtggtcttcccaagaagatggcacttgagttatttaagcccttt
attttcagtaagcttgagttgcgcggtttagcgacgaccattaaagccgctaagaaaatg
gtagagcgcgaagagcctgttgtttgggatattcttgatgaagtgattcgtgagcaccct
gtgttgcttaaccgcgcgccaacgcttcaccgtttgggtattcaagcgtttgagcctgtt
cttattgaaggtaaagctatccaattgcaccctctcgtgtgtgcggcgtataacgccgac
ttcgatggtgaccaaatggcggttcacgtacctttgactatcgaagcgcagctagaggcg
cgtgctttgatgatgtctaccaacaatattttatcgccagcatcaggtgagcctatcatc
gtgccttctcaggacgtggtattgggcttgtactggatgacgcgtgagcgcgtaaatggt
ttaggtgaaggcatggctttctctgatgcacaagaagtatcgcgtgcattctacgccggt
aaggtgcatcttcagtcgcgcattaaatgtcgtattaacgacattattatgagtgaagat
ggcgaaacggaagagaccaaaaaacttgttgagactactgtaggtcgtattttgttgtgg
gaaattgttcccgacggcgttcctttcgaactaattaaccgcaacatggttaaaaaggcg
atctcaacggttataaacttctgttatcgcattgttggtcttaaggcgacagttattttc
gcagaccaattaatgtacatgggatacgacttctcaactaagtctggctcatcgattggt
gtgaatgatttccaaataccggatgagaaagccgagcttattggtcgtgctgaagccgaa
gtgaaagaaatcgaaacccagtatgcttcaggtttggtaacacaaggcgaaaaatacaac
aaagttatcgatatttggtcgcgagctaacgatctagtggcgaagtcgatgatggaaggt
atttctactgagcctgtgattaataaagctggcgaagaagagaagcaagcctcattcaac
tcggtatttatgtatgccgattcaggtgctcgtggttcgccagctcagatccgtcagttg
gccggtatgcgcggtttgatggcgcgtccagatggttcgatcatcgagacccccattacc
gctaacttccgtgaaggcctaaacgtacttcagtactttatatcaacgcacggtgctcgt
aaggggcttgcggataccgcactaaaaacggctaactcgggttacttaacgcgtcgcttg
gtggatgttgcacaggacgttgttattacagaagtagattgtggcactgaccgcggcttg
accatgacgcctgtaattgagggtggtgacatcatcgaatctttgggtgatcgtatcttg
ggtcgtgttatcgcgcaggatgttgttcgcccaggtagcgatgaaatcctagtacctgcg
ggcaccattatcgatgagaaatgggttgagcgcgtagagcatatggcgatcgatgaagtt
atcgtgcgctctgccattaactgtgaaacccgccatggtatctgtgcgcagtgttacggt
cgtgacttggctcgcgggcatcgtgccaatgtgggtgaagctattggtgttattgctgca
cagtcaattggtgagcctggcacacagcttacgatgcgtaccttccacattggtggtgcg
gctagccgagcgtctgctgttgacaatgttcaaattaagcaagacggtactattcgctta
cacaacattaaaactgtatctcgtgaagatggctctttggttgcggtatcgcgctcgggc
gaaattgctgttgccgatgctactggccgtgagcgtgagcgttataagattccttacggt
gccgtaattagtgcgaaagagggtgctgaagttgccggtggcgctattgttgcgaaatgg
gatccgcacactcaccccatcattacagaaatgaccggtaaggttattttgagtggcatg
gaagatgggttatctgtgcgtcgccagcaagatgcgatcacaggtctttcgtcaatcgag
attatggacccttccgagcgtccatctgccggtaaagacttgaaacctgctgtgacctta
gttgatgccgaaggcaatgaattgtacttgcctaacactaaccagcctgcacactacatg
ctgccaaacaagtcgattttgagcttggccaatggcgatatggttagcattggtgacgtt
attgcgcgtattcctcaagagggttcaaaaacgcgtgatattaccggtggtctgccgcgt
gttgccgacttgtttgaagcgcgtaaaccgaaagagccttcaatcttggcggagatatcc
ggtacggtatcgttcggtaaagaaactaaaggtaagcgccgccttgttattacgccacca
aatggtgaagtaatggaagatggctctacgcactacgaagtgctgattcctaagcatcgt
cagttaaccgtgttcgaaggtgaagcggtaactaagggtgaggttgtgtcagatggccca
tctaacccgcatgacatcttaaggttgaagggcgtggcggcgttggcagattacatcacc
aacgaaatccaagacgtttaccgcttacagggtgtaaaaattaacgataagcacatcgag
gttattgttcgccagatgttgcgcaaagttgaaatcacagaaatgggtgattctgacttc
gttaagggcgaacaggcggaatttgtacgcgtgcttgagcaaaacgaaaagctgcgtgct
gaaggcaagcagcctgcgcgttatgtgcgtgagctgttgggtattactaaggcctctttg
gcaacagagtcgtttatttcggcggcatcgttccaggagaccacacgtgtacttactgag
gctgcggtaaccggtaaggttgataccttgcgcggtttgaaagaaaacgttgttgtgggt
cgacttattcctgcgggaaccggtttggcttatcacaaagagcgtcgtcgtaagcgtgag
caagttgaggaagttgttacagagacagttagtgcagcggaagttgaagccgcacttaca
gaagcgctgcgctcaagtaatgattaa
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