Marinilactibacillus sp. 15R: BKP56_08555
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Entry
BKP56_08555 CDS
T04573
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marr
Marinilactibacillus sp. 15R
Pathway
marr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKP56_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marr03019
]
BKP56_08555
03400 DNA repair and recombination proteins [BR:
marr03400
]
BKP56_08555
Enzymes [BR:
marr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKP56_08555
Messenger RNA biogenesis [BR:
marr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKP56_08555
DNA repair and recombination proteins [BR:
marr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKP56_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
DIX
DUF4247
Motif
Other DBs
NCBI-ProteinID:
API89300
LinkDB
All DBs
Position
1752958..1754424
Genome browser
AA seq
488 aa
AA seq
DB search
MNLSVIEQTLNEKFGFKEFRPGQIEAIEAALQKFDTLVMLPTGSGKSICYQLPGYLKEGL
VLIVSPLLSLMQDQVERLKKSGERQVAALNSLSSSNEKKRIFNNLNKLKFLFISPEMIQY
DFVINRLIKVKIALFVVDEAHCISQWGMDFRPDYLKIGEVKEKLNNPVTMALTATATNRV
RDEIKDSLKMDEEQTKEVIYSVNRDAIKLKVEICEGNKKEKLKEFVRNLQKPGIIYFSSK
KLADELAQELRSELGLSVESYHSDILTDDKIKIQQQFIENSVQIICATSAFGMGIDKSDV
RFIIHYHVPSNPEMYLQEIGRCSRDGKDGIAILLFEYGDQFIQKRLQEDALPDKSLLSYV
YKNYHKIKSNQEDPRVQIAQYYQESGIPLSIAVRQVEIRERLKSEQLDFMMQYIKHKGCK
RNFILKYFDEVIDVKPDKCCSSCNPSLEECFYKYEEGSIVRNKVDMNWRKRLKELYKIDD
ESIKTRKI
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaatctatcagtaattgaacaaactctaaatgaaaaattcggtttcaaagaatttaga
ccaggtcaaatagaagcgatagaggctgcactccagaagtttgatacgctggttatgctt
ccgaccggaagtggaaaatcaatttgttatcaactgcctggctatctaaaagagggatta
gtattaattgtctctcctttattatctttgatgcaagatcaggtcgaaaggcttaaaaag
tctggcgaacgacaagtggcagcgttaaatagtttatcttcaagtaacgaaaagaaaaga
atttttaataatttaaataagttaaaatttctttttatttctccagaaatgatccagtat
gattttgtaattaatagattaataaaggtgaaaatagcactttttgttgttgacgaagca
cattgtatatcccaatggggaatggatttccgaccggattatcttaaaataggagaagtg
aaagaaaagttgaataatccagtaacaatggctctgactgctactgcaactaatagagtg
agagatgaaatcaaagattctttgaaaatggatgaagagcaaacaaaagaagttatctat
tctgttaatagagatgcgataaagttaaaagtagaaatatgtgaagggaataaaaaagaa
aaattaaaagaatttgtaaggaatttacaaaaaccaggtattatttatttttcaagcaaa
aaattggcagatgaacttgctcaagagttaagaagtgaacttggactgtcagttgaaagt
tatcattcagatatacttacagacgacaaaattaaaatacaacagcaattcattgagaat
tctgtacagattatttgtgctacaagtgcatttgggatgggcattgataaatcagatgtt
cgatttattattcactatcatgtcccatcaaatccggaaatgtaccttcaggaaataggt
aggtgtagtagagatggtaaagatgggatcgcaattttactttttgaatatggagatcaa
tttattcaaaagagactccaagaagatgctttaccagataaatcgctgcttagttacgta
tacaaaaactatcataagataaaatctaatcaagaagatccaagagtgcaaattgctcaa
tattatcaggaatctggaattccacttagcattgctgtgaggcaggttgaaataagagaa
cgattgaaaagtgaacaattagacttcatgatgcaatatattaagcataaaggatgtaaa
agaaattttatattaaaatactttgatgaagtcatagatgttaagccagataaatgttgc
agctcttgtaatccaagtttagaagagtgtttttataaatatgaagagggttcaatagta
aggaataaggtggacatgaattggagaaagagactaaaagaattgtacaaaatagacgat
gaatctattaaaaccagaaaaatatga
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