Maribacter hydrothermalis: BTR34_10085
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Entry
BTR34_10085 CDS
T04597
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mart
Maribacter hydrothermalis
Pathway
mart03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTR34_10085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mart03400
]
BTR34_10085
Enzymes [BR:
mart01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTR34_10085
DNA repair and recombination proteins [BR:
mart03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTR34_10085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
MFD_D3
DUF3463
Motif
Other DBs
NCBI-ProteinID:
APQ17657
UniProt:
A0A1B7ZFB4
LinkDB
All DBs
Position
complement(2350598..2353966)
Genome browser
AA seq
1122 aa
AA seq
DB search
MSHSSIQQRYNQSPQIGKLQNTIANSEKTESKNIQLKGLVGSSLSFLISSIFKTEERPFV
AIFNDKEEAAYYLNDLERLIGEDHVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRK
KPVVIVTYPDALFEKVVTRKELDKNTLKMKLGDTLSLDFLNEILFEYKFKRVDFVTEPGE
FSVRGGIVDVFSFSHDEPYRVEFFGDEIESIRTFDVETQLSKEKVKSITIVPNMADKFLN
EKRQSFLSYIASNTLVFAKNTDLLYDRLDDFFEKAKEAFTKLSKDIKHAEPEELFMGGIE
FCQQLSGFTVLSQDAQRNAPSLVEFHTKPQPSFNKKFDLLIENLNTYKDQGYTNYIFCAS
EQQAKRFHDIFEEINQQVHYQIIVSPLFQGFIDDDQKLVCYTDHQIFERYHKFHLKNGYA
KKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLMYGERDILYVSIH
SLHKISKFNGKDGAPPKIYKLGSGAWKKIKDKTKSRVKKIAFNLIKVYAKRRLEKGYQYN
PDSYLQNELEASFIYEDTPDQSTATEDVKRDMESERPMDRLICGDVGFGKTEVAIRAAFK
AVDNGKQVAVLVPTTILAFQHHRTFTERLKDMPVTVDYLNRFRTAKEKKDTIERLAAGKV
DIIIGTHQLVNKKVQFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQ
FSLMAARDLSTITTAPPNRYPIESQVVRFNEEIIRDAISYEIERGGQIFFIHNRIENIKE
VAGMIQRLVPDAKVAVGHGQMEGKKLESLMLGFMNSEFDVLVSTTIVESGLDVTNANTIF
INNANNFGLSDLHQMRGRVGRGNKKAFCYFITPPYEVMTNDARKRIEALEQFTELGSGFN
IAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKENEFKDLYEEVEGKHEK
IFVKETQIDADFELLFPDDYINNITERLTLYTDLNQVKNEEALQKFESQLVDRFGELPDE
AEDLLNSVRIKWIANSIGLEKIVMKQGKMIGYFISDQQSAFYQTSTFTRVLQYVQSHAQQ
CKIKEKQTRNGLRLLLVFDNIRSVDRAYLALKPFEIKEKTIV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcattcttctatccaacaacggtacaatcagtctcctcaaatagggaaactgcaa
aatactattgctaattctgaaaaaacagaatctaaaaacattcaattaaaagggcttgta
ggatcatcgttatcctttttaatttctagcatttttaaaactgaagaacgacctttcgtg
gcaattttcaatgacaaagaagaagctgcctattatttaaatgacttggagcgccttatc
ggggaagaccatgtactcttttaccctggtagttatagaagaccttaccaaatagaagaa
actgacaatgctaatgttcttttacgtgccgaagtattgaacagaataaattccagaaaa
aaacctgtggtaattgtcacctacccagatgcgctttttgaaaaagttgtcacccgaaaa
gagttagataagaataccctaaaaatgaaattaggggatacactttcgttagatttttta
aatgaaattttatttgaatataaatttaaaagagtagattttgtaaccgaacctggtgaa
ttttctgttcgtggaggtattgttgatgtattttcgttttcacatgacgaaccttataga
gttgagttttttggagatgaaatagaaagcattagaacttttgatgtggaaacacaactt
tctaaggaaaaggtgaaatcaattactatagtgcctaatatggccgacaagtttttaaat
gaaaaaagacagagttttttgtcttatatagcatctaacacattggttttcgccaaaaat
acagatttattgtatgaccgtttagacgatttctttgaaaaggcgaaagaagcatttacc
aaattatctaaagatataaaacatgccgagccagaagaactatttatgggcggcatagaa
ttttgtcagcaactatctggttttaccgtattaagtcaagatgctcagcgtaatgctcct
agcctagttgagttccacactaaacctcaaccctcttttaataagaagtttgatctatta
attgagaatttaaacacttataaagaccaagggtataccaattatatattttgtgccagt
gagcaacaagccaaacgttttcatgacatttttgaagagataaaccaacaggtccactac
caaattatagtgtctccgctgtttcaaggttttatagatgatgatcaaaaattagtttgc
tatacggaccatcaaatttttgaacgataccataaattccatttaaagaatggttatgcc
aaaaagcaggccattacattaaaagaattaaataaactagaaattggagattacgttacc
catatagatcatggcattggaaaatttggcggacttcaaaagatagacgtagaaggcaaa
aaacaggaagccattaaactaatgtatggcgaaagagatattctttatgtcagcatacat
tcactccacaaaatttccaaatttaatggcaaagatggtgccccgccgaaaatttacaaa
ttaggctccggagcctggaaaaaaattaaggacaagaccaaatctcgtgtcaagaaaatc
gcctttaacttaattaaagtctacgctaaacgaagactagaaaaagggtatcagtacaat
cctgatagttatttacagaacgagttggaagcatctttcatttatgaagatactccagat
caaagtactgctacagaggatgtaaaaagagatatggaaagtgaacggcctatggaccgt
ttaatttgtggtgatgtaggctttggtaaaacagaagtggccatacgtgctgcctttaaa
gctgtggacaatggcaaacaggttgccgtattggtgccaacaactatcttagcttttcaa
catcatcgcacttttacagagcgactaaaagatatgcccgttaccgtagactaccttaat
aggtttagaaccgcgaaggagaaaaaagatactattgaacggttagctgctgggaaagtt
gatataattattggaacgcatcaactggtaaataaaaaagtacaatttaaagacttaggt
ctcttaattgtggatgaagaacaaaaatttggagttgcagttaaggataaattaaaatct
atcaaagaaaacgtagatgtgcttacgctaactgcaacaccaattccacgaactttacaa
tttagccttatggctgcacgagacctttctaccattaccaccgcaccgccaaataggtat
ccaatagaaagtcaggttgtacgctttaatgaggaaattataagagatgccattagttat
gaaatagaacgtggcgggcaaattttctttattcacaaccgaattgaaaatataaaagag
gtagctggtatgattcagcgccttgttccagacgcaaaagtagcggtaggtcatggccaa
atggaaggtaaaaagttagaatcgctaatgctaggttttatgaatagcgaatttgatgtt
ttagtctctacaactattgttgaaagcggcttagatgtaaccaatgccaataccattttc
ataaataacgctaataattttggtttgagtgatttgcaccaaatgcgaggacgtgttggt
cgtggaaataaaaaagcgttttgttattttattactcctccttacgaagtaatgactaac
gatgcccgtaaacgaattgaagcactagagcaatttactgaacttggtagcgggtttaat
attgctatgaaagatttggagattcgtggagccggagatttattgggtggtgaacaaagc
ggatttataaatgaaataggatttgaaacctaccaaaagattttggccgaagccatagac
gaacttaaagaaaatgagtttaaagatttatatgaagaagttgagggcaaacatgaaaag
atttttgttaaggaaacacagatagatgctgactttgaactgctgtttccagatgattac
ataaataatataacagaaaggctaaccttatatacagatctaaatcaagtaaagaatgaa
gaagcgcttcaaaaatttgagtcgcaattggttgatcgttttggtgagttaccagatgaa
gctgaagatctattgaattcagttcgtatcaaatggatagcaaatagcattgggctagag
aagattgttatgaagcaaggtaaaatgattgggtattttataagcgaccaacaatcggca
ttttatcaaacttctacatttacaagagtattacaatatgtgcagtcacatgcacaacag
tgtaaaataaaagaaaagcaaactcgtaacggcttacgattattgttggtgtttgataat
attagatcagtagatagagcatatttggctttaaagccatttgaaataaaagaaaaaaca
attgtataa
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