Palleronia sp. THAF1: FIU81_02235
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Entry
FIU81_02235 CDS
T06247
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru03030
DNA replication
maru03410
Base excision repair
maru03420
Nucleotide excision repair
maru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU81_02235 (polA)
03410 Base excision repair
FIU81_02235 (polA)
03420 Nucleotide excision repair
FIU81_02235 (polA)
03440 Homologous recombination
FIU81_02235 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maru03032
]
FIU81_02235 (polA)
03400 DNA repair and recombination proteins [BR:
maru03400
]
FIU81_02235 (polA)
Enzymes [BR:
maru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIU81_02235 (polA)
DNA replication proteins [BR:
maru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU81_02235 (polA)
DNA repair and recombination proteins [BR:
maru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FIU81_02235 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU81_02235 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QFU07488
LinkDB
All DBs
Position
422155..424944
Genome browser
AA seq
929 aa
AA seq
DB search
MSFGKGHHLHLVDGSAFIFRAFHALPPLTRKSDGTPVGAVSGFVNMLWKMIQDNKGPDAP
THAAVVFDKGSHTFRNDMYDQYKANRDEMPEDLRPQIPLTRDATRAFNLACLEQEGFEAD
DIIATLACKAREAGGRCTIISSDKDLMQLIGDGVVMFDAMKNTTIDREGVEAKFGVGPER
VVDVQALAGDSVDNVPGAPGIGIKTAALLINEFGTLEELLDRAEEVPQPKRRQTLIEHRE
QIELSKKLVQLDCDMTLDYDLASLEVKEPDPDTLLQFLGDMEFRTIVRRVSEELGVDTPA
IPAASITAADEEIEEPPFPEDYTWVKTEAELADWVERATAQGFVAIDTETTSLNEMQALL
VGVSLALGPGVACYIPLAHKENAEADLFSTDALADGQIDFDTALKHLKPLLEDSAVLKIL
QNAKYDYKILSRLGIHITPIDDTMLISYAQHAGLHNHGMDALSERYLGHTCIPIKELIGT
GKSQITFDKVPVDKAVRYAAEDADVTLRLHRTLKPSLHRARVTTVYETLERPLIPVLARM
EMAGVQVDRNTLSRMSGAFAQKMAGLEAEIAEIAGAEFNVGSPKQLGEILFDKMGLPGGK
KGKTGAYSTGADILEELATEHELPRKVLDWRQVSKLKSTYTDALQDHIDPETGRVHTSYS
IAGASTGRLASTDPNLQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHIAGI
DALKQAFKDGQDIHATTASEMFGVPLDQMTADVRRQAKAINFGVIYGISGFGLARNLRIP
REEAQGFIDRYFERFPGIKDYMAETTAFAKEHGYVETLFGRRINTPEINARGPGAGFAKR
AAINAPIQGTAADVIRRAMIRMEDAIADLPATMLLQVHDELLFEVDEGHQDALIATAREV
MEGAANPTVHLTVPLDADAGQGASWADAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcggcaaaggccaccacctgcatctggtcgacggctcggccttcatcttccgc
gcctttcacgcgctgccgccgctgacgcgcaagtcggacggcacgcccgttggcgcggtc
tcgggctttgtgaacatgctgtggaagatgatccaggacaacaagggccctgacgcgccg
acccacgcggctgtcgtcttcgacaagggcagccacaccttccgcaacgacatgtatgat
cagtacaaggccaaccgggacgagatgcccgaggatctgcgcccccagatccccctgacc
cgcgacgccacgcgcgccttcaaccttgcgtgtctggagcaagaggggttcgaggctgac
gacatcatcgccacgctggcctgcaaggcgcgcgaagccgggggccgctgcaccatcatc
agttccgacaaggacctgatgcagctgatcggtgacggcgtggtcatgttcgacgccatg
aagaacacgaccatcgaccgtgagggggtcgaggccaagttcggggtcggacccgaacgc
gtcgtcgacgtacaggcgcttgccggcgactcggtggacaacgtgcccggcgcgcccggt
atcggcatcaagaccgctgcgcttctgatcaacgaattcggcacgctggaagagctgctg
gaccgcgccgaagaggtcccccagcccaagcgccgccagaccctgatcgagcaccgcgag
cagatcgaattgtccaaaaagctggtccagctcgattgcgacatgacgctggactacgac
cttgcctcgcttgaggtgaaagaacccgaccccgataccctgctgcaattcttgggcgac
atggagttccgcacaatcgtgcgtcgcgtgtccgaagagctcggcgtcgacacgcctgcg
atccccgccgcgtcgatcaccgccgccgacgaagagatcgaagagccgccgttccccgag
gactacacatgggtgaagaccgaggcagaattggccgactgggtcgaacgtgccaccgcg
cagggctttgtggccatcgacaccgaaaccacgtcactgaacgagatgcaggccctgctg
gtcggcgtgtcgctggcgcttggtcccggcgtcgcctgctacatcccgctggcccacaag
gaaaacgcagaagctgacctgttcagcaccgatgcgcttgcagacggccagatcgacttc
gacaccgcgctcaagcacctcaagccgctgctggaagattccgccgttctcaagatcctt
cagaacgccaagtacgactacaagatcctctcccgccttggcattcacatcacgcccatc
gacgacacgatgctgatttcctacgcccagcacgcgggcctgcacaatcacggcatggat
gcgctgtccgaacgctatcttggccacacctgtatccccatcaaagagctgatcggcacc
ggaaaatcccagatcacctttgacaaggtgcctgtcgacaaggccgtccgctacgccgcc
gaggatgccgacgtcacccttcgtctgcaccgcacgctcaagccgagcctccaccgcgcc
cgcgtcacaacggtatatgagacgctggaacgccccctgatccccgtgctggcgcggatg
gagatggcgggcgtgcaggtggaccggaacaccctgtcgcgcatgtccggcgctttcgcg
cagaagatggcagggctggaggccgagatcgcagagatcgcgggggcggagttcaacgtg
ggttctcccaagcagcttggcgaaatcctcttcgacaagatgggcctgcccggcggcaag
aaaggcaagaccggggcctattccaccggggccgacattctcgaagagctcgcaaccgaa
cacgaactgccccgcaaggtgctggactggcggcaagtctcgaagctgaaatcgacttat
accgatgcgttgcaggatcatatcgaccccgaaacgggccgcgtgcatacgtcatactcc
attgcaggggccagcaccgggcgcctcgcctcgaccgatccgaacctgcagaacatcccg
attcggacagaggaaggccgccgcatccgagaggctttcgtcgcccccgaaggcaaggtg
ctggtcagcctcgactattcccagatcgaactgcgcatcctcgcccacatcgccgggatc
gacgcgctgaaacaggcgttcaaggatgggcaggacatccacgccaccaccgcgtcagag
atgttcggcgtgccgctggatcagatgaccgccgacgtgcgccgacaagccaaggccatc
aacttcggcgtcatctacggcatcagcggtttcggccttgcccgcaacctgcggatcccg
cgcgaagaggcgcagggcttcatcgaccgctatttcgaacgcttccccggcatcaaggac
tacatggccgagacgaccgccttcgccaaggaacacggctacgtcgagaccctgttcggc
cgtcgcatcaacacgcccgaaatcaacgctcgcggccccggcgctggctttgcgaagcgc
gccgccatcaatgcgccgatccaagggacggccgctgatgtcatccgccgcgcgatgatc
cgaatggaggacgcgatcgccgatctgcccgccaccatgcttttgcaggtccacgatgaa
ctgttgttcgaggtggacgaaggccatcaggatgcgctgatcgccaccgctcgtgaggtg
atggagggggccgccaatcccaccgttcacctgaccgtcccgttggatgccgacgcgggg
cagggggcgagttgggccgacgcgcattga
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