Palleronia sp. THAF1: FIU81_06595
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Entry
FIU81_06595 CDS
T06247
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU81_06595 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maru03019
]
FIU81_06595 (cshA)
03009 Ribosome biogenesis [BR:
maru03009
]
FIU81_06595 (cshA)
Enzymes [BR:
maru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU81_06595 (cshA)
Messenger RNA biogenesis [BR:
maru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU81_06595 (cshA)
Ribosome biogenesis [BR:
maru03009
]
Prokaryotic type
rRNA helicases
FIU81_06595 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Laman-like_dom
Motif
Other DBs
NCBI-ProteinID:
QFU08338
LinkDB
All DBs
Position
1281139..1283250
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AA seq
703 aa
AA seq
DB search
MIQTLQDALSARGYDTLTPVQEAVTAPELDGADLLVSAQTGSGKTVGFGLAIGPTLLDDD
GKMPPANTPVALIVAPTRELAMQVQRELAWLYADTGARFAACVGGMDMRDQRRALERGAH
IVVGTPGRLTDHIRRGSLKLDGLKAAVLDEADEMLDLGFREDLEFMLAEAPSTKRTLMFS
ATVPAMIATLAKKYQNDAVRVNTVGGGRQHSDIQYQAMRVHPSDAENAIINVLRFHDAEN
AIVFANTRATVARLTARLGNRGLAVVSLSGELSQTERTHALQAMRDGRAKVCVATDVAAR
GIDLPNLDLVIHAELPTNTEGLLHRSGRTGRAGRKGVSALVVPPKATSKAERLLKWAKIN
AEWVAAPSADDILKRDEERLLSDESWADEITPEEAAFAEKLMAQYDAETIAAGYLRLYRA
HHSAPEELSDPTTAPKREERKPFGPSAWVALSKGRNDRAEPRWILPLICRMGGLTKDQIG
AIRIQPAETYVELTADSIDGFMAATGGKLEDGMTVRRADGPPDSGPRPAKRSDGPSDGPR
APKPGAPKAEAKSDWSPEKTEPAPSADMAPRKPRAPKADAGPKKRWDKSADGDAPKKRWD
KPADGAAPKRDKPTGAKPAHARADRDASAPKKRWDKPKGGKPGDGAKPHRGKPGPGATSD
RSSAGPSKPGSKVRPGAANTGQRMERPGGKPKGKGGDKGPRRK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatccagaccctgcaagatgcgctgtcggcgcgcggctacgacacgctgacccccgtc
caagaggcggtgaccgccccagaactcgacggcgcggaccttctggtctctgcccagacg
gggtcgggcaagacggtgggcttcggtctggcaatcgggccgaccttgctggacgacgac
ggaaagatgcctccggcgaatacgcccgtggccttgatcgtggccccgacgcgcgaactt
gcgatgcaggtgcagcgcgagttggcgtggctttacgcagacaccggcgcccgattcgcc
gcctgtgtgggtggcatggacatgcgcgaccaacgccgcgcgctggagcgtggcgcgcat
atcgtcgtgggtacgccggggcgtctgacggaccacatccgccgcggctcgctgaagctg
gacgggctgaaagccgccgtgctggacgaagcggacgagatgctggacctcggcttccgc
gaggatttggaattcatgctggccgaagcgcccagcaccaagcgcacgctgatgttttcg
gccaccgtgccggcgatgatcgcgacgctggccaagaagtaccagaacgacgccgtgcgc
gtgaacacggtcggcggcgggcgtcagcacagtgacattcagtatcaggcgatgcgcgtt
catccatcggatgccgagaatgcgatcatcaacgtgctgcgctttcacgacgccgaaaac
gccatcgtcttcgccaacacccgcgccactgtcgcgcggctgaccgcgcgtctgggcaat
cgcgggctggcggttgtgtcgctgtcgggcgaactcagccagaccgagcggacccacgca
ttgcaagccatgcgcgacgggcgggcaaaggtctgcgtggcgacggatgtggccgcgcgt
ggtatcgacctgccgaacctcgacttggtgatacacgcggaattgccgacgaacaccgaa
ggcctgttgcaccgttcgggtcgcacgggccgggcagggcgcaagggcgtgtccgcccta
gtcgtgccgccgaaagccacaagcaaggccgaacgccttctgaagtgggcgaagatcaac
gcggaatgggtcgcagccccctctgccgacgatattctgaagcgcgatgaagaacggctg
ctgtccgacgaatcttgggccgacgagatcacgccagaggaagccgccttcgccgaaaag
ctgatggcgcaatacgatgcggaaaccatcgcggcaggctacctgcgtctctatcgcgcg
catcattccgcccccgaagagctgtctgacccgacgaccgcgccgaagcgagaagagcgc
aagccgttcggaccctctgcctgggttgcgctgtccaagggccgcaacgaccgggcagag
ccgcgctggatcctgccgctgatctgccgcatgggcgggctgaccaaggatcagatcggc
gcgatccgtatccagcctgcagagacctatgtggagctgacggcggacagcatcgacggc
ttcatggctgcgacgggcggcaagctggaagatgggatgaccgtgcgccgcgccgatggc
ccgcccgattcggggccgcgtccggcgaagcggtcggatggtccctcggatgggccgcgt
gcgccgaagccgggcgcaccgaaagcagaggcgaagtccgactggtcgcctgaaaagacc
gaacccgcgccgtctgccgatatggcgccgcgcaagccacgtgcgccgaaggcggatgcc
ggtccgaagaagcgctgggacaagtctgccgacggggatgcaccgaagaagcgatgggat
aagcccgccgatggcgctgcgcccaagcgggacaagccgacaggggcgaagcctgcacac
gcgcgtgccgaccgggacgcatccgcgccgaaaaagcggtgggacaagccgaagggcggc
aagcccggcgatggtgcgaagccgcaccggggcaagccaggtcccggcgcgacttcggat
cgatcctcggctggcccctccaaaccgggatcgaaagtgcggcccggtgcggcgaacacc
gggcagcggatggagcgtccgggcggcaagcccaagggcaagggcggcgacaagggaccc
cggcgcaagtga
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