Palleronia sp. THAF1: FIU81_06925
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Entry
FIU81_06925 CDS
T06247
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIU81_06925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maru03400
]
FIU81_06925 (mfd)
Enzymes [BR:
maru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIU81_06925 (mfd)
DNA repair and recombination proteins [BR:
maru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIU81_06925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_30
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFU08404
UniProt:
A0A5P9JER8
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All DBs
Position
1351712..1355191
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AA seq
1159 aa
AA seq
DB search
MPDTKRISLGGAPEGFDAHLVLSEVGKAGQVVHVARDDKRMAAMQAALAFFDPGLPVFTF
PAWDCLPYDRVSPNADISAQRMATLAALCHAMPKRFVLLTTLNAATQKVPPRDTVADASF
TATVGSRLDEEGLRKFLVRMGFTQAPTVIEQGDYAIRGGIIDVWPPGHDSPVRLDLFGDT
LDGARRFDAATQRTTDKLKEVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHAGIEHWLGFFHDKLETLFDYLPDAAITLDDQVTPARLGRWDTIADQYDNRKDAM
TKKGRVDSVYKPAPPETLYLDDAAWETAIKGHRIVRFHPLAQATGPGVADAGGRIGRNFS
PERQQESVSLFGALADHVKAKRKDGQVIVASYSDGARERLQGLLEDEDVDGATLIRDFRD
VPEGKGGLHLVVWGLEHGFEGAIDGTHLTVISEQDVLGDRLVRKSPKRKRAENFLTEAQS
LSQGDLVVHVDHGVGRFQGMEVVTAAGAAHECVLIEYQGGDRLFLPVENIELLSRFGHEE
GMLDRLGGGAWQSKKAKLKQRIREIADRLIRIAAERLLRKAPVLEPETHAWEDFSARFPY
EETEDQMSAIEDVMADLGSGTPMDRLIVGDVGFGKTEVAMRAAFIAAMSGVQVAVIAPTT
LLARQHYKSFADRFRGFPVQVRQLSRFVSDKDAKLTRQGIADGTCDIVIGTHALLAKSVK
FKNLGLLVIDEEQRFGVNHKERLKSLRTDVHVLTLTATPIPRTLQMSLTGVRDLSIIGTP
PVDRLAIRTYVSEFDAVTIREALLREHYRGGQSFLVAPRITDLTELEEFLKEEVPEISYV
SANGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVWRADMFGLAQLYQI
RGRVGRAKTRAYAYMTTKPRTKLTPTADKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLV
GEEQSGQIREVGFELYQSMLEETISKLKSGELEGAIELGDSDWSPQINLGVPVLIPEDYV
PDLDVRLGLYRRLSDLTTKVELEGFAAELIDRFGELPREVNTLLLVVRIKAECKKAGIAK
LDAGPKGVTIQFHNDKFASPEGLVAFIKDQDGEAKVKDNKIIVRRDWTKDSQKIKGSFAV
AQELARHVRSEKEKRAKAG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaccaaacgcatctcgctcggcggagcacccgaaggcttcgacgcccatctc
gtcctgtccgaagtcggcaaggcggggcaggtcgtccatgtcgcgcgcgacgacaagcgg
atggccgcgatgcaagccgccttggccttcttcgaccccggcctgccggtttttaccttc
ccggcgtgggactgcctcccctatgaccgcgtcagcccgaacgccgacatctcggcgcag
cgcatggcgacgctggccgccctgtgccacgcgatgcccaaacggttcgtccttttgacc
acgctgaacgccgcgacgcaaaaggtgccgccccgcgatacggtggcagacgccagcttc
accgcgaccgttgggtcgcggctggatgaagaagggctgcgcaagtttctggtgcgtatg
ggatttacccaagcccccaccgtcatcgaacagggcgactacgcgatccgcggcggcatc
atcgacgtctggccgccgggtcacgacagccccgtgcgcctggatctgttcggcgatacg
ctggacggcgcgcgccgcttcgatgccgcgacccagcgcaccaccgacaagctgaaggaa
gtcgaacttgccccggtgtcagaagtcattctggatgaggccgccatcacccgctttcgc
cagaactaccgcatcgaattcggcgcggcgggcaccgacgatccgctgtacgaggccgtc
agcgcaggccgcaaacatgcggggatcgagcactggctgggtttcttccacgacaagctg
gagacgctgttcgactacctgcccgatgccgcgatcacgctggacgatcaggtcacgcct
gctcggctggggcggtgggacaccatcgccgaccaatacgacaaccgcaaagacgcgatg
acgaagaagggccgcgtagattccgtctacaagcccgcaccgccagagacgctgtatctg
gacgatgccgcgtgggagacggcgatcaagggccaccgtatcgtgcgctttcacccgctg
gcacaggcgaccggccccggtgtcgcagatgcaggtggacgaatcgggcgcaacttcagc
cccgagcgtcagcaggaaagcgttagccttttcggtgcgttggccgatcatgtaaaggca
aagcgcaaagatgggcaggtcatcgtcgccagctattccgatggcgcgcgcgaacgtctg
caaggtctgctggaagacgaggatgttgatggcgcgacgctgatccgcgatttccgcgac
gtgccagaaggcaaaggcggcctgcatctcgtcgtctgggggctggagcacgggttcgag
ggcgcgatcgacggcacgcatctgacggtgatctcggaacaggacgttctgggcgaccgg
ctggtgcgcaagagccccaagcgcaaacgggccgagaatttcctgaccgaagcgcagtcg
ctcagccaaggcgatctggtcgttcacgtagaccacggtgtcgggcgctttcaggggatg
gaagtcgtcaccgccgccggtgcggcccacgagtgcgtactgatcgagtatcagggcggc
gatcgcctgttccttcccgtggaaaacatcgaactgctgtcccgcttcggtcacgaagag
gggatgctcgacaggctgggcggcggtgcttggcagtcgaagaaggccaagctgaagcag
cgcatccgtgaaatcgcagatcgcctgatccgcatcgccgccgaacgcctgctgcgcaag
gcccccgtgctggagccagagacccacgcctgggaagatttctcggcccgattcccgtac
gaggagactgaggatcagatgtccgccatcgaggacgtgatggccgaccttgggtccggc
acgcccatggaccgtctgatcgtcggcgacgtgggcttcggcaagacagaggtcgccatg
cgcgccgcctttatcgccgccatgtcgggcgtgcaggtcgctgttatcgcgccgaccaca
ctgctggcgcggcagcactacaagtccttcgctgaccgcttccgaggattcccggtgcag
gtccgccaactgtcgcgcttcgtatccgacaaggacgccaaactgacccgccagggcatc
gccgacggcacctgcgatatcgtcatcggcacccacgcgttgctagcgaaatcggtgaag
ttcaagaatctcggcctgctggtcatcgacgaggaacagcgcttcggcgtgaaccacaag
gaacggctgaagtccctacgaacggacgtgcatgtcctgaccctgaccgcgacgccgatc
ccgcgcacgttgcagatgtcgctgactggcgtgcgcgatctgtcgatcatcggtacgccg
cccgtcgaccgcttggccatccgcacctacgtgtccgagttcgacgcggtgacgatccgc
gaagccctgttgcgcgaacattatcgcggcgggcaaagtttcctcgtcgctccgcgcatc
accgacctgacagagctggaagagttcttgaaggaagaggtgccggaaatcagctacgtc
tcggccaacggtcagatggcggcgggagagctcgatgaccggatgaacgccttctacgac
ggcaagtatgatgtgcttctggcgacgaccatcgtggaatcgggtcttgatatcccgacc
gcgaatacgatggttgtgtggcgcgcggatatgttcggccttgcgcagctgtaccagatt
cggggtcgcgtcggtcgcgccaagacgcgcgcctacgcctacatgaccactaagccacgc
accaagctgacgccgaccgccgacaagcgcctgcgcgttttggggtcgctggactcgctg
ggcgccggatttacgcttgccagccaggatttggatatccggggcgcgggcaaccttgtt
ggagaggaacagtccggccagatccgggaagtgggcttcgagttgtatcagtcgatgctc
gaggaaacgatctccaagctgaagtccggcgaactcgaaggcgctatagagctcggcgac
agcgattggtctccgcagatcaaccttggggttccggtcctgataccggaagattacgta
cccgatctggatgtacgccttggactttaccgtcgcctgtccgacctgacgacgaaggtg
gaactggaaggcttcgccgccgaactgatcgaccgtttcggcgaactcccgcgcgaggtg
aacactctgctgctggtcgtacgcatcaaggccgaatgcaagaaggccgggatcgccaag
ctcgacgccgggccgaagggcgtcacgatccagttccataacgataagttcgcctctccc
gaagggctggtggccttcatcaaggatcaggacggcgaggcgaaggtgaaggacaacaag
atcattgtccgccgcgactggaccaaggacagccagaagatcaagggcagcttcgcggtg
gcgcaggaattggcgcggcacgttaggtctgagaaggagaagagagcaaaggcagggtag
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