Palleronia sp. THAF1: FIU81_08405
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Entry
FIU81_08405 CDS
T06247
Symbol
spoVD
Name
(GenBank) Stage V sporulation protein D
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru00550
Peptidoglycan biosynthesis
maru01100
Metabolic pathways
maru01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
FIU81_08405 (spoVD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
FIU81_08405 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
maru01011
]
FIU81_08405 (spoVD)
Enzymes [BR:
maru01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
FIU81_08405 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
maru01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
FIU81_08405 (spoVD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
QFU08693
LinkDB
All DBs
Position
1640048..1641973
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AA seq
641 aa
AA seq
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MKRTQRDTETSVGIITRRAAVLGGVQLGVAGLLGWRMRQMQVEQADEFRLLAEENRINMR
LVAPPRGLIFDRNGIPLAENSQNYRIVIVKEDAGDVEDVLSRLQQLIYIDADEMERARKE
IARRSPFVPVTITDQRQWEDVATVAVNAPALPGITPDVGLTRQYPLGADHAHVVGYVGPV
SDYDLSRIDDDDPLLQIPKFQIGKTGVEQKTERALRGKAGARRIEVNAAGRVMRELDRDD
GTPGADLQLTVESKLQNFAEARLAIGLSAAAVVMDVRTGDLLSVGNAPTFDPNKFVRGIS
VADYGELTGNIYRPLANKAVQGAYPPGSTFKMLVSLAALEAGLLSSDETVYCGGYTELGN
RRFHCWKRGGHGRMNLEKSLQQSCDVFYYEMAQRVGIDRIAETARKFGIGEDFDLPMSAV
TSGVMPDKAWLRQRYDQEWRVGDSLNASIGQGYVLSSPLQLAVMTARIASGTKIQPRLVK
SIDSVETPVVGAEPLGLNENHLRLIRKGMFAVSNTNRGTAFRSRIAADGMAMAGKTGTSQ
VRSAVVNNSQVPWEQRDHALFVGYAPYDNPRYAISVVVEHGGGGSTAAAPIARDIMLFAL
HGELPPMESYPSGVRREVESLFAELDLRSDFRPTRDGKNRA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcacgcaacgcgataccgaaacatccgtcggcatcatcacgcgccgggccgcg
gtgctgggcggggtgcaactgggcgtcgccggactgctgggctggcggatgcggcagatg
caggtcgagcaagccgatgagttccgcctgctggccgaagaaaaccgcatcaacatgcgc
cttgtcgcgccgccgcgtgggttgatcttcgaccgcaacggtatcccgctggccgagaat
tcacagaactaccgcatcgtcatcgtcaaggaagacgcgggcgacgtggaagacgtgctc
tcgcgtctgcaacagctgatctacatcgatgcggacgagatggagcgtgcccgcaaggag
atcgcccgccgctctcccttcgtgcctgtgacgatcaccgatcagcgacagtgggaagac
gtagcaaccgttgcggtgaacgcccccgccttgcccggcatcacgccggatgtgggcctg
actcgacagtatcctctgggcgcggaccacgcgcatgtcgtgggctatgtcggcccggta
tcagactacgaccttagccggatcgacgacgacgatccgcttttgcagatccccaagttc
cagatcggcaagacgggcgttgagcaaaagaccgagcgcgcgctgcgcggcaaggccggt
gcgcgccggatcgaggtgaacgccgccggtcgggtcatgcgagagttggaccgtgacgac
ggcacgcccggtgcagacctgcagttgaccgtggaaagcaagctgcagaacttcgccgaa
gcgcggctggctatcggactatcggcagcggcggtcgtgatggacgtgcgcacgggcgat
ctgctgtccgtcggcaacgcgcccaccttcgaccccaacaaattcgtgcgcggcatctct
gttgccgactatggcgaactcacgggcaacatctaccggccgttggccaacaaggccgtg
cagggcgcctatccgccgggttccacgttcaagatgttggtctcgctggccgctctggaa
gccgggctgctgtcgtcggacgagacggtctattgcggcggctacaccgagctgggcaac
cgccggttccactgctggaagcgcggtgggcatggccggatgaatctggaaaaatcgctc
cagcagtcgtgtgacgtcttctactacgaaatggcccagcgcgtcggcatcgaccgtatc
gccgagaccgcgcgcaagttcggcatcggagaggacttcgatctgccgatgtctgccgtt
acctctggcgtgatgccggacaaggcgtggctgcggcagcgctacgatcaggaatggcgc
gtgggcgacagcctgaacgcttctatcgggcagggctacgtgctgtcttcgcctttgcaa
ctggccgtgatgacggcgcggatcgcgtccggcacgaaaattcaaccgcgcttggtcaag
tccatcgacagtgtggaaacgcccgtggtcggggcagaaccgcttggcctgaacgagaac
cacttgcgtctgatccgtaagggcatgttcgccgtatcgaacaccaatcgcggcacagcc
tttcgcagccggatcgccgccgatggcatggcgatggcgggcaagaccggtaccagtcag
gtccgctcggcagtcgtcaataacagccaagttccgtgggagcagcgcgaccatgcgttg
ttcgtgggctacgcgccctatgataacccgcgctacgcgatctctgtcgtggtcgagcac
ggtggcggcggatcgacggcggcggcgcccatcgcgcgcgatatcatgcttttcgccctg
catggagaattgccaccgatggaaagctacccctccggcgtgcgtcgcgaagtcgagtcg
cttttcgccgaactcgacctgcgcagcgactttcgccccaccagagacgggaaaaaccgc
gcgtga
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