Palleronia sp. THAF1: FIU81_13705
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Entry
FIU81_13705 CDS
T06247
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU81_13705 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maru03019
]
FIU81_13705 (rhlE2)
Enzymes [BR:
maru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU81_13705 (rhlE2)
Messenger RNA biogenesis [BR:
maru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU81_13705 (rhlE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
CMS1
P-loop_SecA
Fe-ADH
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QFU09726
LinkDB
All DBs
Position
2683301..2684587
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AA seq
428 aa
AA seq
DB search
MLGLAPALLSRLAERGLDTPTPIQAKAIPHGLQGRDVMGLAQTGTGKTIAFGLPILQGLI
EDGSRPAPKSVRALVLAPTRELANQIADNLRPLSGGSQIGIAVVTGGVSANRQKGRLERG
VDILIATPGRLLDLLNQKALTLSDTRFLVLDEADQMLDMGFIHDLRKIAQHVPETRQTLL
FSATMSKDMNEIAQTFLRNPIRIEVASPGKPADKVTQEVRFMPKEAKVDELIAQLGTHKG
QRALIFVKMKHSADKLMKQLERAGFPGAALHGNRSQNQRDRALKAFTNGEIDVLVATDVA
ARGIDIPEVDFVYNFELPNIPETYVHRIGRTARAGRDGKSVSFCQPDELGYLRDIEKLLK
ITVPVAQDASWAHEAPIAPPKPGGGRRRGGGGGGGRPGAGRGAKPGGARPQAAKPAGGNR
RRRGPKKA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgctgggccttgcgcccgcccttctttcccgccttgcagagcgtggccttgataccccc
acacccattcaggccaaagccattccccacggcctgcagggccgggacgtcatgggtctg
gcacagaccggcaccggcaagaccatcgccttcggcctgcccatactgcagggcctgatc
gaagacggaagccgtcccgcgcccaaatccgtacgcgcccttgtgcttgcccccacccgc
gaactggccaatcagatcgccgacaacctgcgcccgttgtccggcggcagccagatcggc
atcgccgtcgtcaccggcggtgtgtcggccaaccgtcagaagggccggctggagcgcggc
gtcgacattttgatcgccacgccgggtcgcctgctggaccttctgaatcagaaggccctg
accctgtccgacacgcgtttcctggtgctggacgaggccgaccagatgctcgacatgggt
ttcatccatgacctgcggaagatcgcgcagcatgtgcccgagacacgccagacgctgctg
ttctcggccaccatgtccaaggacatgaacgagatcgcccagaccttcctgcgcaaccct
atccggatcgaggtcgcctctccgggcaagccagccgacaaggtgacacaggaagtgcgt
ttcatgccgaaagaggcgaaagtagacgagcttatcgctcagcttggcacccacaagggc
cagcgggcgctgatcttcgtgaagatgaagcactctgccgacaagctgatgaagcagctg
gagcgcgccggttttccgggtgccgcgctgcacggcaaccgcagccagaaccagcgcgac
cgggcgctgaaggcctttaccaacggcgagatcgacgtgctggtcgccaccgacgtggcc
gcccgcggcatcgacatcccagaggtcgatttcgtctacaacttcgagcttccgaacatc
cccgagacctatgtccaccgcatcggtcgcaccgcgcgggcggggcgcgatggcaagtcg
gtcagcttctgccagccggatgaactgggctatctgcgcgatatcgagaagctgctgaag
atcaccgttcccgtggcgcaggatgcgtcctgggcccacgaggcgcccatcgcgccaccg
aagcccggcggcggtcgtcgccgtggcggtggcggcggtggcggtcgtcccggtgcgggt
cgcggcgcgaagccgggcggcgcgcgtccgcaggcggccaaacccgctggcggcaatcgc
cggcgtcgtgggccgaagaaagcctaa
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