Palleronia sp. THAF1: FIU81_14510
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Entry
FIU81_14510 CDS
T06247
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
maru
Palleronia sp. THAF1
Pathway
maru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU81_14510 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maru03019
]
FIU81_14510 (pnp)
03016 Transfer RNA biogenesis [BR:
maru03016
]
FIU81_14510 (pnp)
Enzymes [BR:
maru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FIU81_14510 (pnp)
Messenger RNA biogenesis [BR:
maru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIU81_14510 (pnp)
Transfer RNA biogenesis [BR:
maru03016
]
Prokaryotic type
tRNA degradation factors
FIU81_14510 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QFU09887
LinkDB
All DBs
Position
2832412..2834544
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AA seq
710 aa
AA seq
DB search
MFNEVKKSMQWGEETLTLETGKVARQADGSVIATYGETSVMANVTYARQQKPGQDFFPLT
VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH
DLVNDPDMVAMIAASAALTLSGAPFMGPIAACRVGYTDGDYILNPEIEDMQKLRNNPEQR
LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFT
PPNYDDLYQAVKSAGEDQMRAAFAITDKQERTTAISDARAHIVTQLNEEQQLDPNLGSAF
KKLESSILRGDVVKGGKRIDGRATDEVRDIVCETGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQMIDALEGTYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGDYA
ILTDILGDEDHLGDMDFKVAGTANGITSLQMDIKVAGITPEIMSKALEQAKAGRMHILGE
MNKALSEASEFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASSNGDQIQKAYDMIYSIVAEPEEGKVYKGTVVKIVDFGAFVNFFGKRDGLVHVSQIENK
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLAMKMVNQETGEEEAPADAEG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgaagttaagaaatcgatgcagtggggcgaagagacgctcacgctcgaaacc
ggcaaggttgcacgccaggccgatggatcggtcatcgccacctacggcgagacctccgtg
atggccaacgtcacctacgcccgtcagcaaaagcccggacaggactttttcccgctgacc
gttcactacaacgaaaaatattacgccgcgggcaagatccccggcggcttcttcaagcgc
gaggcgcgtccgaccgaaaaggaaacgctgacctctcgcctgatcgaccgtccgatccgc
ccgctgttcgtgccgggcttcaagaacgaagtgctcgtgatctgcaccgtgctgtcgcac
gatctggtcaacgatcccgacatggtggcaatgatcgctgcctctgcagcgctgacgctg
tcgggtgcccccttcatgggtccgatcgcggcctgccgcgtgggttacacggatggcgac
tacatcctgaaccccgaaatcgaagacatgcagaagctgcgcaacaaccccgagcagcgt
ctggaccttgtcgtcgcgggcaccaaggacgccgtgatgatggtggaatccgaagcctac
gagctttcggaagaggaaatgctgggcgcagtgaagttcgcgcatgagcagatccagccg
gtgatcgacctgattatcgacttggccgaggacgccgcgaaagagccgttcgacttcacc
ccgccgaactacgacgacctgtaccaagccgtgaagtccgccggcgaagaccagatgcgc
gccgctttcgccataaccgacaagcaggaacgcacgacggccatctcggacgcgcgcgcc
cacattgtcacgcagctgaacgaagagcagcagctggatccgaaccttggctctgccttc
aaaaagctggagtcgtccatcctgcgcggtgacgtggtcaagggtggcaagcggatcgac
ggtcgcgcgaccgacgaagtgcgcgacatcgtttgcgaaaccggcatcctgccccgcacc
cacggctctgccctgttcacgcgcggcgagacgcaaggtctggtcgtcaccacgctgggc
accggcgacgatgagcagatgatcgacgcgctggaaggcacctacaagtcgaacttcctg
ctgcactacaacttcccgccgtactcggtcggcgaagtcggtcgtttcggacctccgggc
cgtcgtgagatcggtcacggtaagctggcatggcgcgcccttcaggcggtgcttccggct
gcgacggacttcccctacacgatccgcctggtctccgagatcacggaatccaacggttcc
tcctcgatggcttctgtctgcggcggctcgctgtcgatgatggacgcgggcgttccgctg
aaggcaccggtggccggtgtggccatgggcctgatcctggaagaagatggcgactacgcg
atcctgaccgacatcctgggtgacgaagaccacctgggcgacatggacttcaaggttgcg
ggcaccgccaacggcatcacctcgctgcagatggacatcaaggtcgccggtatcacgcca
gagatcatgtccaaggcgctggagcaggcgaaagccggccggatgcacatcctgggcgag
atgaacaaggcgctgtccgaagcgtccgagttctccgagcatgcgccccggatcgagacg
atgcagatccccaccgacaagatccgtgaagttatcggatcgggcggcaaggtgatccgc
gagatcgtggaagtgtccggtgccaaggtcgacatcaacgacgacggtgtcatcaagatc
gcgtcctcgaatggtgaccagatccagaaggcctacgacatgatctactcgatcgtggca
gagccggaagagggcaaggtctacaagggcacggtcgtcaagatcgtcgacttcggcgcc
ttcgtgaacttcttcggcaagcgcgatggcctggtccacgtgtcccagatcgagaacaag
cgcctgaaccatccgtcggacgtgctaaaggaaggccaggaagtttgggttaaacttctg
ggcttcgacgatcgcggcaaggtccgtctggccatgaagatggtcaaccaggaaaccggc
gaagaagaagccccggcagacgccgaaggctga
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