Marixanthomonas sp. SCSIO 43207: INR76_04875
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Entry
INR76_04875 CDS
T07485
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
marx
Marixanthomonas sp. SCSIO 43207
Pathway
marx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
INR76_04875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marx03400
]
INR76_04875 (mfd)
Enzymes [BR:
marx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
INR76_04875 (mfd)
DNA repair and recombination proteins [BR:
marx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
INR76_04875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UAB82094
LinkDB
All DBs
Position
complement(1055426..1058758)
Genome browser
AA seq
1110 aa
AA seq
DB search
MSKTVVNSLFSKSPQAGKLGEAISNSEKKTSISGLVGSATSIVIAEVFNTSEKPFLLILN
DKEEAAYHLNDLENLLGDQNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRRKPAI
IVTYPEALFEKVVTRKELEKNTLKLKIGEEVSIDFVNEVLFEYKFKRTDFVTEPGEFSVR
GGILDVFSFSNDEPYRIEFFGDEVDSIRTFDVETQLSDAQLKKISIIPNVENKMMEETRE
SFLKYIASKTIVFLKNEEVISSSIDKLFEKATQAFNEASGEVKQSKPAELFCTSEVINKQ
LSEFSTVHLSSKSEANSISFNTKPQPSFNKQFNLLIENLNANVENGYKNYIFCSSEQQAK
RFHDIFEDAEQHVSEYQTVVFPLYQGFIDDDQKNVCYTDHQIFERYHKFQLKNGYAKKQA
ITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKQQEAIKLIYGERDILYLSIHSLHK
ITKYNGKDGKEPKIYKLGSAAWKKLKQKTKKRVKEIAFNLIELYAKRRLQKGFAYDPDSY
LQLELESSFMYEDTPDQSTATDDVKRDMESEQPMDRLICGDVGFGKTEVAIRAAFKAVDN
GKQVAVLVPTTILAFQHHKTFQERLAEMPVNVDYLNRFRTAKERKKVLENLKNGTLDIVI
GTHQLVNKSVEFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLM
AARDLSVITTPPPNRYPVETHVIRFGEESIRDAVRYEISRGGQVYFVHNRIENIKEVAGM
IQRLVPDAKIGIGHGQMDGKKLEKLMLGFMNNEFDVLVSTTIIESGLDVPNANTIFINNA
NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEDARKRITALEQFSELGSGLNIAMK
DLEIRGAGDLLGGEQSGFINEIGFETYQKILSEAIDELKEKEFKDLYEGTEHEKKDFVKE
TVLDTDFELLFPDDYVNSITERLNLYTKLNELQSEEELQQFEKELIDRFGELPEEAVDLL
NSVRIKWIAIRMGLERIVMKKNKLVGYFVSDQQSAYYQSPAFTNVLQYVQNHPQRVTMKE
KKTRNGLRLLLTFDRITSVNRALDALAPFR
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacggttgtaaattcacttttttcaaagtctcctcaagctgggaaacttggg
gaagctatatcaaattctgaaaaaaagacttctatttcaggattggttggctctgctact
tctattgttattgctgaagtttttaatacttcagaaaaaccctttttactcattttgaat
gacaaagaagaagcagcctatcacttaaacgatttggaaaacttactgggagatcaaaac
gtccttttctaccctggaagttatcggcgaccctatcaaattgaagaaaccgataatgcc
aacgttttgttgcgtagtgaagtgctaaaccgcatcaactctcgccgaaaacccgcaata
attgtaacgtatcctgaagcactttttgaaaaggtggttaccagaaaagaactggaaaaa
aacaccttaaaactaaaaataggtgaagaagtttcaattgattttgtaaatgaggttttg
tttgaatacaagtttaagcgcaccgattttgtaaccgagcccggagagttttctgtacgt
ggtggtattctagatgtgttcagttttagtaatgatgagccatatagaattgagtttttt
ggtgatgaagttgacagtattcgcacctttgatgtagaaacacaactgagtgacgcacaa
ctgaagaaaatttctatcattcccaacgttgaaaacaaaatgatggaagaaacccgagag
agtttcttaaaatatattgcatcaaaaacaattgtttttctgaaaaatgaagaagtaatt
agcagcagtattgacaaactttttgaaaaagcaactcaagcatttaacgaagcctctggc
gaagtaaaacaaagtaaaccagcagaacttttttgcacttctgaagttataaataaacaa
ctttctgaattttcaacggtacatttaagcagtaaatctgaggcaaattctatttcgttt
aatacaaaacctcaaccttctttcaataagcaatttaatctattgattgaaaacctaaat
gcaaatgtagagaacggttacaaaaattatattttttgcagcagtgagcaacaagcaaaa
cgctttcatgatatttttgaagatgctgagcaacacgtaagtgaatatcaaaccgttgta
tttcctttatatcaaggctttattgatgatgaccaaaaaaatgtgtgttacacagatcat
caaatttttgagcgttatcataaatttcagcttaaaaacggatatgcaaaaaaacaagcc
atcaccctaaaagaattaaccaatcttgaagtaggtgattatgtaacacatattgaccac
ggaattggaaaatttggcggtctccaaaaaatcgatgttgaaggtaagcagcaagaagcc
attaagcttatttatggcgaacgtgatattttatacctcagcattcattcgcttcataaa
atcacaaaatacaacggaaaagacggaaaagaacccaaaatatacaaactaggaagcgcc
gcctggaaaaaactaaaacagaaaaccaagaaacgggttaaagaaattgcattcaattta
attgaattatacgcaaaacgccgactacagaaaggttttgcatatgatccagactcctat
ttacagttagagctagagtcttcttttatgtatgaagacacaccagatcaatctaccgca
accgacgatgtaaaacgcgatatggaaagtgagcagcctatggatcgcctcatttgtggt
gatgtagggtttggaaaaaccgaagttgccattcgtgctgcttttaaagccgtagacaac
ggaaaacaagttgcggtattggttcctaccactattttggcatttcaacatcataaaacc
tttcaagaacgattggcagaaatgcctgtaaacgtagattatttaaaccgttttagaact
gcaaaagagcgtaaaaaggttttagaaaatcttaaaaacggaacactagacattgttatt
ggtacgcaccaattggttaataaatcggttgagtttaaagaccttggtttattaattata
gatgaagaacaaaagtttggtgttgctgtaaaagacaaactaaaaactataaaagaaaat
gtagataccttgaccttgactgcaacacctattcctcgtacgttgcagtttagcttaatg
gcagcaagagatttatcagttatcaccacaccaccgcctaatcgctatccggtagaaacc
catgtaatccgttttggtgaagaaagtattcgtgatgctgttcggtatgaaatatcacgt
ggtggtcaagtatactttgttcataatcgtattgaaaatataaaagaagttgccggaatg
attcaacgcttagttccagatgcaaaaataggcattggtcacggacaaatggatggtaaa
aaactagaaaaactcatgctaggttttatgaacaatgagtttgatgtattagtttcaacc
accattattgaaagcggcctggatgtaccaaacgccaatactatttttatcaataatgcg
aataattttggattgtcagacctacaccaaatgcgcggtcgcgtaggtagaagcaataaa
aaagccttttgttattttattacacctccctattcggtaatgacagaagacgctagaaaa
cgaattacagctttagaacaattttcagaattgggtagcggtttaaacattgctatgaaa
gatttagaaatccgtggcgccggtgatttattaggtggtgaacaaagcggttttataaac
gagattggttttgaaacctatcaaaaaattctttccgaagctattgatgaattgaaagag
aaagaatttaaagatttatatgaaggcaccgaacacgagaaaaaagactttgtaaaagaa
actgtgcttgatactgattttgaattactatttcctgatgattatgtaaatagtattaca
gaacgattaaacctatacacaaagttaaacgaactacaatctgaagaagagcttcagcaa
tttgaaaaagaattaattgatcgctttggcgaacttcctgaagaagctgtagacttatta
aacagtgttcgtattaagtggattgccattagaatgggactagaacgcattgtaatgaag
aaaaataagttggtcggttattttgtgagtgatcaacaaagtgcatactatcaaagtccg
gcgtttacaaatgtgttgcaatatgttcaaaaccatccacaacgagtaacaatgaaagaa
aagaaaacccgtaacggtttgcgtttgttgttaacttttgatagaattacttcagtaaat
agagccttggatgcgttagctccttttagataa
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