Marixanthomonas sp. SCSIO 43207: INR76_08435
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Entry
INR76_08435 CDS
T07485
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
marx
Marixanthomonas sp. SCSIO 43207
Pathway
marx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
marx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INR76_08435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marx03021
]
INR76_08435 (rpoC)
03400 DNA repair and recombination proteins [BR:
marx03400
]
INR76_08435 (rpoC)
Enzymes [BR:
marx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INR76_08435 (rpoC)
Transcription machinery [BR:
marx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INR76_08435 (rpoC)
DNA repair and recombination proteins [BR:
marx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INR76_08435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UAB80154
LinkDB
All DBs
Position
1781386..1785684
Genome browser
AA seq
1432 aa
AA seq
DB search
MARNKENTVQKFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPLQKMDFLTEEEYLNALEAIPVENQYL
EDSDPNKFIAKMGAECLIELLQRIDLDALSFELRHKANNETSKQRKTEALKRLQVVEALR
EANKNRENKPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKLFECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVAVPSQDMVLGLYYMTKPRKSTDDVK
VKGEGLTFYSAEEAVIAYNEKRVDLNAEIKIKAKDFNENGELVYQIIETTLGRVIFNQEV
PEEAGYINEVLTKKSLRDIIGRILKVTSVPRTAAFLDEIKTLGYKFAFEGGLSFSLGDII
IPEEKLSMIEDANKQVDGIVGNYNMGLITNNERYNQVIDIWTATNAELTELSMKRIREDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEVDCGTLRGIEVSALKKNEE
IVETLEARIIGRIALNDVINPLTKEVLAVAGEHISEEKAKIIGDSAVETVEVRSPLTCEA
KKGICSQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENKL
VVKYDGKAEIEDLKTVKGEDAEGNEVDIVISRTSEIKLIDPKTGITLSNNNIPYGSTLYV
KDGDKLKEGDVVCQWDPYNGVIISEFAGKIKYENIEQGVTYQVEIDEQTGFQEKVISESR
NKKKIPTLQILGKKDEVIRSYNLPVGAHLMVDDGEKIKIGKVLVKIPRKSSKAGDITGGL
PRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSNQILVQ
ENDYVRAGMPLSDGSITPEDILRIEGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVRQ
MMRKVRIVDSGDTTFLENQLAHKDDFIEENDKIFGMKVVENAGDSDTLKEGQIVTPRELR
DENSILKRNDKALVEARDAINATATPILQGITRASLQTKSFISAASFQETTKVLNEAAVS
GKVDTLEGLKENVIVGHKIPAGTGMREYDSIIVGSKEELEEMTREKQEVNYN
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataaagaaaacacagttcagaaattcaataaaatttctattggtttagcc
tctcctgaatcgattttggcagaatctcgtggagaagttttaaaaccggaaacgattaac
taccgtacgcacaagccggagcgtgacggccttttctgtgagcgtatttttggtcctgta
aaggattatgaatgtgcctgtggtaaatataaacgaattcgctacaaaggtattgtatgt
gaccgttgtggtgtagaggtaactgaaaagaaagtacgtcgtgatcgcgtagggcacatt
aacttagtagttcccgtagctcacatttggtatttccgtagtttaccaaataaaatagga
taccttcttggattgccatctaagaagttggatatgattatatattatgaaagatatgtt
gttatccaacctggtatcgctaaaaatgaagaaggagagccgcttcaaaaaatggacttc
ttaaccgaagaagaatatttaaatgctcttgaagcaattccggtagaaaaccaatattta
gaagacagcgatccaaataaatttattgcaaaaatgggagctgagtgtttaattgaattg
ttacagcgtatcgaccttgatgcactttcttttgaattaagacacaaagcaaataacgaa
acctcaaaacaacgtaaaaccgaagcattaaaacgtcttcaagttgttgaagcattacgt
gaggctaataaaaaccgggaaaataaacccgaatggatgattatgaaggtggtgccaatt
ataccaccagaattacgtcctttagtaccacttgatgggggtcgttttgcaacttcagat
ttaaatgatttataccgtcgtgttattataagaaacaatcgtcttaagcgattaatggaa
attaaagctccagaagtaattttacgtaatgaaaaacgtatgcttcaagagtctgttgat
tcattatttgataacacacgtaaatcatcagcagtaaaaacagatagtaaccgtccacta
aaatcactttcagattcattgaaaggtaaacaaggacgtttccgtcaaaatttacttggt
aaacgtgtagattactcggcacgttcggtaattgttgtaggaccagaattaaaactattt
gaatgtggtattccaaaagatatggctgccgaactttacaagccttttgtaattagaaaa
ttaattgaaagaggtattgtaaaaacagttaaatctgctaagaaaattatagataaaaaa
gaacctgtagtttgggatatacttgaaaacgtacttaaaggacatccggtattattaaac
cgtgctcctacgttacaccgtctaggtattcaagcattccaacctaaattaattgaaggt
aaagcaatccaattacacccattagtatgtacggcatttaacgccgactttgatggtgac
cagatggccgttcaccttccattgggaccagaagcaattctggaagctcaattattaatg
ttggcttcgcacaatatcttaaatccagctaacggaagtccggtagcagtaccatctcag
gatatggtattaggtctttattatatgaccaagccaagaaaatctacagatgatgtaaaa
gttaaaggagaagggttaacattctactcagcagaagaagcagttatcgcttacaatgaa
aaacgagtagatcttaacgctgaaataaaaataaaagcaaaagactttaacgaaaacgga
gaactggtatatcaaattatcgagactactttaggtagagtgatatttaatcaagaggtg
ccagaagaagcaggttacattaatgaagtattaaccaagaaatcactacgtgatattatt
ggtagaattcttaaagtaactagtgtaccaagaacagcagctttccttgatgaaattaaa
acattaggatacaaatttgcatttgaaggaggattgtctttcagtttaggagatattatt
attcctgaagaaaaactatctatgattgaagatgcaaacaaacaagtagacggtattgta
ggaaactacaatatgggacttattaccaataacgagcgttacaaccaggttattgatata
tggacagcaaccaatgctgagttgaccgaactttctatgaaacgtattcgggaagaccag
caaggatttaactctgtgtatatgatgcttgactctggagcacgtggtagtaaagagcaa
attagacagttaaccggtatgcgtggattgatggcaaagcctaaaaaatctaactctggc
ggtggtgagattattgaaaacccaattctttcaaactttaaagaaggactttcaattctt
gaatactttatctctactcacggtgcgcgtaaaggtcttgccgataccgcacttaaaaca
gccgatgcaggttacttaacccgtcgtctagtagatgtttcacaagacgttattattaat
gaagtagattgtggtacattaagaggtatagaagtttcagcattgaagaaaaatgaagaa
atagttgaaacgttagaggctagaattattggtcgtatagcattaaacgatgttataaac
ccacttactaaagaagtgttggccgttgccggtgaacacatttcagaagagaaagccaaa
attattggtgactctgctgtagaaactgtagaagtgcgttctccattaacgtgtgaagct
aaaaaaggaatatgttcacaatgttatggtcgtaaccttgcaaccaacaagatggttcaa
cgaggagaggctgtaggtgttgtagccgctcagtcaattggtgagcctggtacacagtta
acgcttcgtaccttccacgtgggtggtattgcaggtaacatttcagaagaaaataaactt
gttgttaaatacgacggtaaagctgaaattgaagaccttaaaactgtaaaaggtgaagat
gctgaaggaaatgaggttgatattgtaatttcacgtacttcagaaattaaattgattgat
ccaaaaacaggtattactttaagtaacaacaacattccttacggttctacactttatgta
aaagatggtgataagctgaaagaaggagatgtagtttgtcagtgggatccatataacggt
gtaattatttcagagtttgcaggtaagattaagtatgagaatatcgagcaaggtgttacc
taccaagttgaaattgatgagcaaacaggattccaagaaaaggtaatttcagaatctaga
aataaaaagaaaataccaacacttcaaatcttaggcaaaaaagacgaagtaatccgttca
tacaatttaccagtaggtgcacacttaatggtagatgacggtgaaaagattaaaattggt
aaagtacttgtaaaaatacctcgtaaatcatcaaaagctggtgatattaccggtggtctt
ccacgtgtgaccgagttatttgaagcacgtaatccttcaaatcctgctgtagtaagtgag
attgatggtgttgtttctttcggaaaaattaaacgtggtaaccgtgagattatcgttgag
tctaagctaggcgaaatcaaaaagtacttggtaaagttatctaatcaaattcttgtacaa
gaaaatgattatgtacgtgccggtatgccactttcagatggatctattactcctgaagat
attttacgtattgaaggaccttcagcagtacagcagtacttagtaaatgaagttcaagaa
gtataccgtctacaaggtgtaaaaattaacgataagcactttgaggtagtagtacgtcaa
atgatgcgtaaagtacgtattgttgatagtggtgacactacattcttagaaaatcaatta
gctcataaagatgattttattgaagaaaacgataaaatcttcggaatgaaagtagttgaa
aacgctggagatagtgatactttaaaagaaggacagattgtaacaccacgtgagttacgt
gatgaaaactcaatcttgaaacgtaatgataaagcactagttgaagctagagatgcaatt
aatgcaactgcaactcctatattgcaaggtattacaagagcatcgctacaaactaaatct
tttatctctgcggcttccttccaggaaactacaaaagtattaaacgaagctgctgtaagc
ggtaaagttgatactcttgaaggattgaaagagaatgttattgtaggtcataaaatacca
gcaggtaccggaatgcgtgaatacgattctataatcgtaggaagcaaagaggagcttgaa
gaaatgactcgcgaaaaacaagaagtgaattacaactaa
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