Marixanthomonas sp. SCSIO 43207: INR76_12095
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Entry
INR76_12095 CDS
T07485
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marx
Marixanthomonas sp. SCSIO 43207
Pathway
marx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INR76_12095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marx03019
]
INR76_12095
03400 DNA repair and recombination proteins [BR:
marx03400
]
INR76_12095
Enzymes [BR:
marx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
INR76_12095
Messenger RNA biogenesis [BR:
marx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INR76_12095
DNA repair and recombination proteins [BR:
marx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
INR76_12095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UAB80843
LinkDB
All DBs
Position
2572055..2573956
Genome browser
AA seq
633 aa
AA seq
DB search
MKTPIQILENYWGFQSFKPMQEEIIASVLNDQDTVALLPTGGGKSICFQVPALLKPGTCI
VVSPLIALMADQVSTLKERGIKAMHISGGISFTELQTAMDNVLYGNYTFLYLSPERLQQE
IVQNTIRQMNVSLIAVDEAHCISQWGNDFRPAYKNITVLRELKPLAPIIALTATATPEVL
DDTIKELNLELPEVFKNSFVRANLAYKVLRVDDKLYKIEQLLKKNTQSAIIYVRNRKSTV
ETSNHLNQLGFSSTFYHGGISKKEKDDKLEKWRSGNIPIMVATNAFGMGIDHPHVRFVIH
IQLPESIESYFQEAGRAGRDGMYAQAVLLYNEYDKKLVQKQFIDALPTPKNLKFLYRKLN
NYFQISYGEGEFQEFSFNFRDFCEVYNLNILLAYNSLQSLDRLGVIQLSQEFGRKSTVQF
LVSSEQVLDYFTTDMKASIIGKTILRLYGGIFETPTHIDLDIISKKTGQSIEVIISVLQK
LERDEIISLLLKVTDATITFLKPREDDKTINVVAKEVKVLNKKKKKQVAAVLHYVENNKE
CRSVQLARYFGDIEAKVCGICSVCASQKLSTSKDESILIAEKIIQLLEEKEMDARELSEK
STFTSEKIIYVLRLMLDKGTVKLNTKNQFYLNS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacaccaatacaaattcttgaaaattactggggtttccaatcgtttaaaccgatg
caggaagagattattgcatctgtacttaacgatcaagacacagtcgctttactacccacg
ggtggtggaaagtcaatttgctttcaagttccggcattattaaaacccggaacatgtatt
gtagtatcaccactaattgctttaatggcagatcaagtaagtacattaaaagaacgcggt
attaaagcgatgcatatttctggagggatttcttttaccgaattacaaactgcaatggat
aatgtgctgtacggcaattatacctttctttacctatctccagaacgtttacaacaagaa
atagtacaaaatacgattcggcaaatgaatgtgagtttaattgctgtagacgaagcacat
tgtatatcgcaatggggaaatgattttagaccagcttataaaaacattaccgtgttaaga
gagttaaaaccattggctccaattattgcgcttacagcaacagcaactccagaagtgctt
gatgatactattaaagaacttaatctagagttacccgaagtatttaaaaactcatttgtg
agagctaatttagcttacaaagttttgcgtgtagatgataaactctataaaattgagcaa
ctccttaaaaaaaacacacaatctgccattatttatgtaagaaatagaaaaagtacggtt
gaaaccagtaaccacttaaatcaactaggtttttctagcaccttctatcacggcggaatt
tcaaaaaaagaaaaagatgataagttagaaaaatggcgttctggtaatatacccataatg
gttgctaccaatgcatttggtatgggtattgatcatcctcacgttcggtttgtgatacac
attcaattacctgaaagtattgagagttactttcaagaagctggccgtgcaggtcgtgac
ggaatgtatgctcaagcagtattgctgtataatgaatatgataaaaaactggttcagaaa
caatttattgacgcgttacctactcccaaaaatttaaagtttttataccgcaagttgaat
aactattttcagatttcatacggtgagggcgagtttcaagaatttagcttcaattttcgt
gatttttgtgaagtttacaaccttaacattttacttgcttataatagtttacaatcacta
gatagactgggagttatacaactttcacaagaatttggcaggaaatcaacagtgcagttt
ttggtatcttcagaacaagttttggactattttaccacagatatgaaagcttcaattatt
ggtaaaacaatcttgcgtctgtacgggggaatttttgaaaccccaactcatattgatttg
gatataatttcaaaaaaaaccggacaatccattgaggttattatttcagttttacaaaaa
ttggaacgtgatgagataatctcactattgcttaaagttactgatgccactattactttt
ttaaaacctcgtgaagatgataaaacaataaatgttgtcgcaaaggaggttaaggtttta
aacaaaaaaaagaaaaaacaagttgctgctgtgttgcattatgttgagaataataaagaa
tgtagaagtgttcagttagccagatattttggcgatatagaagcaaaagtttgtggtatt
tgttcggtgtgtgcttctcaaaagctttcaactagtaaagatgaaagtatccttattgcc
gaaaaaataatacaactcttagaagaaaaagaaatggatgctcgagagctttcagaaaaa
agtacttttacatcagaaaaaataatttatgtattacggttaatgctagataaaggcact
gtaaaacttaatacaaaaaatcaattttatttaaattcatga
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