Macrococcus armenti: LAU42_05050
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Entry
LAU42_05050 CDS
T07974
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mary
Macrococcus armenti
Pathway
mary03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mary00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAU42_05050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mary03019
]
LAU42_05050
Messenger RNA biogenesis [BR:
mary03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAU42_05050
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Vp24_capsid
Motif
Other DBs
NCBI-ProteinID:
UBH23309
LinkDB
All DBs
Position
976048..977721
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AA seq
557 aa
AA seq
DB search
MNLVKKENEHIKMTPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDVVIPDIN
YVLENKEKLKGIFLSHGHVDAIGALKYIMNQIDAPIYGSRLTIALVKDRMKDAKINKKIK
YYTVNNDSVMRFKNVNVSFFSTSHSIPDSLGIVIHTSHGAIVYTGEFKFDQSLSGSYRPD
ITKMGQIGDNGVLMLISDSTEAEKPGYNTPENVIESHINDEFAKAKGRIIVSCYASNFIR
IQQVLNSAARNNRKVSFLGKSLESSFNIARKLGYFDIKEQLLIPIKDVEKYPKNEVVIIA
TGTQGEPIEALAQMAMNKHNILNIEEGDTVFITTTPSSNMEVILGSTINHLVKAGAHVVP
TNKKIHASGHGCMEELKLMLNLMKPTYFVPVQGEFKMQIAHAKLAAEAGVLPEHIFLLEK
GDCLNFDGEHMLPNEKVTAGNVLIDGIGVGDVGNIVLRDRRLLSEDGIFIAVVTIDPKNR
TIVAGPQIQSRGFVYVRESEALLKEAEEKVQAIVEEGLTKNKIEWAEIKQEMRDKLSKLL
YEHTKRRPMIIPVISEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttagtaaaaaaagaaaatgaacatataaagatgacaccacttggcggtgtaggt
gaaattgcaaaaaacatgtatatcgttgaagtagacgatgaaatgtttatgttagatgca
gggttaatgttcccggaagatgaaatgttagggattgatgttgttattccggatattaat
tacgtgttagaaaacaaagaaaaacttaaaggtatctttttatcgcatggacatgttgac
gctatcggtgcactaaagtatattatgaatcagatcgatgctccgatttatggttctaga
ctaacaatagcgctcgttaaggaccgtatgaaagatgcaaaaattaacaaaaagattaaa
tattatactgtaaataatgattctgttatgcgttttaaaaatgtaaacgtatcatttttc
agtacatctcatagtatacctgatagcttaggtattgtaattcatacatcacatggcgcg
atagtttatactggggaatttaaatttgatcaaagtttatctggaagttatcgtccagat
ataacgaagatgggtcaaattggtgataatggcgtattaatgttgatcagtgattcaact
gaagctgaaaagcctggatataatacacctgaaaacgtgattgaaagccatattaatgat
gagtttgctaaagcgaagggacgcattatcgtatcatgttatgcatcaaactttattcgt
attcagcaagttttaaatagtgctgcaagaaataaccgtaaagtatcatttttaggtaag
tcattagaaagctcatttaatatcgcgagaaagttaggttatttcgatattaaggaacaa
ttactcatcccgattaaagatgtagagaaatatccgaagaatgaagtggttataatagct
acaggtacgcagggagaaccgattgaagcgttagcacagatggctatgaataaacataat
attttaaacatcgaagaaggtgacacagtatttattacgacgacaccatcatctaatatg
gaagttatattagggtcaacgataaaccacttagttaaagcgggtgcacacgttgtacca
acaaataaaaagattcatgcttctggacatgggtgtatggaagagttaaagttaatgctt
aatttgatgaaaccgacttattttgtaccagtacaaggtgaatttaaaatgcagatcgca
catgcgaagttagcagcagaagcgggtgtgctaccagaacatattttcttattagaaaaa
ggagactgtttaaactttgatggtgaacacatgctacctaatgaaaaagtaactgcaggg
aacgttttaattgatggtataggtgtaggggatgtcggtaatattgtacttcgagacaga
agattgttaagtgaagatggtatattcattgctgtagtgacaatcgaccctaaaaatcgt
acgattgtcgcgggaccgcaaattcagtcaagaggatttgtatatgtacgtgagagtgaa
gcattacttaaggaagctgaagagaaagtacaggcgatagttgaagaaggtttaactaaa
aataaaattgaatgggcagaaattaaacaggaaatgcgtgacaagttaagtaagttgcta
tatgaacatacgaagcgtcgtccgatgatcatccctgtgatttcagaaatttaa
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