Macrococcus armenti: LAU42_11420
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Entry
LAU42_11420 CDS
T07974
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mary
Macrococcus armenti
Pathway
mary03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mary00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAU42_11420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mary03400
]
LAU42_11420 (mfd)
Enzymes [BR:
mary01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAU42_11420 (mfd)
DNA repair and recombination proteins [BR:
mary03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAU42_11420 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
AAA_22
IstB_IS21
Glyco_hydro_115
Mfd_cyano
Motif
Other DBs
NCBI-ProteinID:
UBH23538
LinkDB
All DBs
Position
complement(2135683..2139183)
Genome browser
AA seq
1166 aa
AA seq
DB search
MMQILDQFIYRDERFQEYNKALGKKDVLITGLNSSAKAVMIAESYKYHQKQMVIVMSNLY
QAEKLERDLVQLVDEDAVFKFPVQDIMIEEFSTKSPDLMQERIRTLTHLAKGQNGLFLIP
VNGLEKLISQKETFLKYHIDIKLGMDIDLIELQQQLIDMGYQKRERVTTLGEFSVRGGLI
DVYPMIGEPVRIELFDTEVDAIRAFDADSQRSLHNIEHVELSTASEFIFSKEDIDLMALN
LNDAFEATRTKIKTNVRDDLRETYETIKLNMTELLNHNVLRRMVKFAYPIETTIVDYLKE
DAIIIIDEYNRVVEAKDATIRENSEFMESLIESGRGFVGQTFVKEGCLNQLTHHHKVAYF
TLFTASMSVQLEEIFKFSCKPVQQFYGQYDLMLSEFERYRKNDFNIVVLATNDTRKEKIK
TMLTDMKLPVTFRAEESKPGISIIAKGDLSEGLELPYMKLVIITERELFKLRKEKPKRTQ
KKLSNAEKIKSYQELNIGDYVVHTHHGVGRYLGVETLLVNKMHKDYIKIQYKGTDQLFVP
VDQMDQVQKFVGSEDKDPKLNKLGGTEWKKTKARVQKNVEDIAEELLKLYQERERVEGYQ
FGPDTEEQENFEMDFPYEPTDDQKQSLVEIKADMEKRKPMDRLLCGDVGYGKTEVAVRAA
FKAVMDGKQVAFLVPTTILAQQHYETIMERMQDYPVEIQMMSRFRTTKEINETKKGLKSG
FVDIVVGTHKLLGKDIEYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRT
LHMSLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELSRNGQVFYLYNRVATI
YQKAEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDSVGYDLYSEMLQQAVNEKRGIKEETIVPQLEIDV
EIDAYIPAEYIREEQAKIEFYKKLRSVTTEQELIDVQDEMTDRFGEYPEAVDHLMKIVEI
KVNALNFGIIQVKDIGKTIELESSEATTSRINGERLFKATESFGRDLKIEFKNNKITFIL
KKNANWLLSLVQLSQCIQEGIMMDGE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ataatgcaaatactggatcaatttatttatagagatgaacgatttcaggaatataataag
gcgcttggcaaaaaagatgtattgataacaggtttaaattcttcagctaaagcagttatg
attgctgaaagttacaaatatcatcaaaagcagatggttattgttatgagcaacttatat
caggctgaaaagttagaaagagatttagtacagctcgttgatgaagatgcagtatttaag
tttccggttcaggatattatgattgaggagttctcaactaaaagcccggatttaatgcag
gagagaattagaacgcttacccatttggcgaaaggccagaatgggttatttctcattccg
gtgaatggtttagaaaaactgattagtcagaaggaaacttttttaaagtatcatattgat
attaaattaggtatggatatagatttaattgaattacagcaacaacttatcgatatggga
tatcaaaaacgagaacgtgttacaacgctcggtgagttttctgttcgtggcggtttgatt
gatgtatatccaatgattggtgagccggtgcgtatagagttgtttgataccgaagtcgat
gcaattcgcgcatttgatgctgatagtcagaggtcacttcataatattgaacacgtcgaa
ttaagcaccgcaagtgaatttattttctcgaaagaagatattgatttgatggcgcttaat
ttaaatgatgcatttgaagcgacgcgtactaaaatcaaaacgaatgtacgtgacgattta
agagaaacgtatgaaacaattaaattaaatatgacagaattactcaatcataatgtgctg
cgtcgcatggttaagtttgcgtatcctatagagacgacaattgtagattatttaaaggaa
gacgcaattataattatagatgagtataatcgcgtagttgaagcaaaagacgcgacaatc
cgtgaaaacagcgaatttatggaatcgcttatcgagtccggacgcgggtttgttggtcag
acattcgtgaaagaagggtgtttaaatcaattaacgcatcatcataaagttgcatacttt
acgctattcacagcgagtatgtctgtacagctggaagaaatatttaagttctcctgtaaa
cctgttcagcaattttatggtcaatatgatttgatgctttcagaattcgaacgctatcgc
aaaaatgattttaatattgtcgtattggcaacgaatgatacaagaaaagaaaaaattaag
acgatgttaaccgacatgaagcttcctgtaacattccgtgcagaagagagtaagccaggg
atatctatcatcgcgaaaggtgatctttcagaaggtctggaactcccttatatgaagctc
gtcatcattacagagagagagctttttaaactacgtaaggaaaaaccgaaacgtacacag
aagaagctatcgaatgcagaaaagattaagtcataccaggagcttaatataggcgattat
gttgtacatacgcatcatggtgtcggacgttatttaggtgtagagacactgcttgtcaat
aagatgcataaagactacattaaaattcagtacaaagggacagatcagctatttgtaccc
gtagatcagatggatcaagtacagaagtttgttggctctgaagacaaggatccaaagctt
aataaacttggtggaactgaatggaagaaaacgaaggcgcgcgttcagaagaatgtagaa
gatatcgcagaagaattgctgaaactgtatcaggaacgtgagcgtgttgaaggttatcag
tttggtcctgatacagaagaacaggaaaactttgaaatggacttcccttatgaaccgact
gatgatcagaaacagagtctcgttgaaataaaagctgacatggaaaaacgaaagccgatg
gaccgtctgttatgtggagatgttggttacggtaagacggaagttgctgttcgagcagcg
tttaaagcggtaatggatggtaagcaagtagcatttctagtaccgacaacgatattagca
cagcagcactatgaaacgataatggaacgtatgcaggattaccctgtagaaattcagatg
atgagtcgattcagaacgacaaaagagattaatgaaacgaagaaggggctaaagtccgga
tttgtcgatattgttgtaggaacgcataagttacttgggaaagatattgaatataaagat
ttagggttattaattgtggatgaagaacaacgtttcggcgtaacgcataaggaaaagata
aaagcgttaaaaacaaatgtagatgtattgacgctaacggctacgccaattccaagaaca
ttgcatatgagtctgcttggtgtaagagatttatctgttatagaaacgccaccagaaaat
agatttcctgtgcaaacatacgtacttgagtatcagcataacttcataaaagaagcaatg
gaacgtgagttatcaagaaatgggcaagtattctacctctacaaccgcgttgcgacaatt
tatcaaaaggcagagcagcttgagatgatgatgccggatgcgcgtattgcagttgcgcat
gggcagatgtctgaacgtgaacttgaagaaacaatgctcggattcattaatggtgagtac
gatatattagtgacaacaacaattattgaaacaggtgttgatgtcccgaacgcgaataca
ttaattatagaagatgccgatcgattcgggctcagtcagttgtatcaacttcgtggtcgt
gtcggcagaagcaatcgaattagttatgcgtatttcctgcatgcaccaaataaagtgctc
acagaagtagcggagcaacgtttacaggcgattaaagaatttacagagcttggatcggga
tttaagattgcaatgcgggatttaaatattcgtggtgcaggtaacttactcggtaaacag
cagcatggatttattgactctgtcggatatgatctatactcagaaatgttacagcaagca
gtgaatgaaaaacgtggcattaaagaggaaacaatcgtaccacaacttgagattgatgtg
gaaatcgatgcatatattccagctgaatatattagagaagagcaggcgaagatagaattt
tataaaaagcttcgcagcgtaacgacagagcaggaattaattgatgtacaggatgaaatg
acggatcgatttggtgaatatccagaagcggttgatcacttgatgaaaattgttgagatt
aaagttaatgcattgaattttggtattatccaagttaaagatattgggaaaacaattgaa
cttgaatcatctgaagcgacaacgtcacgtattaacggagaacgactttttaaagctaca
gaaagctttggtcgagatttgaagatagaatttaagaacaataaaatcacttttatatta
aagaaaaatgcaaactggttattgtcactcgttcaactatcgcagtgcattcaggaagga
ataatgatggatggagagtaa
DBGET
integrated database retrieval system
