Mycolicibacterium arabiense: MARA_42730
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Entry
MARA_42730 CDS
T07049
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
marz
Mycolicibacterium arabiense
Brite
KEGG Orthology (KO) [BR:
marz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marz03019
]
MARA_42730 (hrpA)
Enzymes [BR:
marz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MARA_42730 (hrpA)
Messenger RNA biogenesis [BR:
marz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MARA_42730 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
NACHT
T2SSE
DUF3106
ABC_tran
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BBY50805
UniProt:
A0A7I7S482
LinkDB
All DBs
Position
3993108..3997037
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AA seq
1309 aa
AA seq
DB search
MSEPSRDELKALRGRLDHLTIHDAARFGRRLRSMRNVTPEQVQRITQQIASAEALVATRE
SAVPQVTYPDLPVSDRRDDIAAAITANQVIVVAGETGSGKTTQLPKICLELGRGVRGTIG
HTQPRRLAARTVAQRVADELGTPLGDVVGYTVRFTDQASNRTLVKLMTDGILLAEMQRDR
RLLAYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAKHFADRHG
VPAPIVEVSGRTYPVEIRYRPLEVEVTDGVDADDPDDPDREIVRTEVRDPTEAIVDAVRE
LEAEPPGDVLVFLSGEREIRDTTEALRDAMRGDRFQTEVLPLYARLPTADQQKVFAPHTN
RRVVLATNVAETSLTVPGVRYVVDPGTARISRYSRRTKVQRLPIEPISQASASQRAGRSG
RTAPGVCIRLYSEADFESRPRYTDPEILRTNLAAVILQMAALGLGDVEAFPFLDPPEARS
IRDGVTLLQELGAFDRNGAITDVGRRLARLPLDPRIGRMILQADTENCVREVLILAAALS
IPDPRERPVDKEEAARQKHARFADEHSDFVSFLNLWRYVSEQRRERSGSSFRRMCREEFL
HYLRIREWQDLTGQLRSIAKDLGIHEQDEPADPASVHAALTAGLLSHVGLREGDSREYQG
ARNTRFVLAPGSVLTRRPPRWIVVADLVETSRLFGRVAARVEPELVERVAGDLVQRTHSE
PHWDANRGAVMAFERVTLFGLPLVARRRIGYAQIDPVLSRELFIRHALVERDWQTRHHFF
RDNGQLLEELAEIEERARRRDLLAGDDEIYALYDARIPPDVVSARHFDAWWKKQRHRTPD
LLTFTRADLLRGDDALDQPDRWEAGDLSLPITYKFEPGAEDDGITVHVPVEVLARLGGDE
FAWHVPALREELIAALLKSLPKELRRNFVPVPDTARALLSTLDPGDQPLLDALQQELRRR
TGVLVPIDAFDVEKVPAHLRVTFAVEGSDGSEVARGKDLDGLKERLDAPMQRAVADVVAG
GLARKGLRGWPDDLDEVPRVIDSTGGRNTVRGYPAFVDVGKAVDLTVFASEVEQRARMAP
GVRRLVRLDVASPVKAVERALDLRTRLVVADNPDGSLSALIDDCADAVTDTLITTPVWTK
AEFAALRTKVSKTLALSTIDVIGRVAKVLGAAHDVRLALPERPVPAQAASIADVRAQLAR
LLPAGFVTATGIAHLADLTRYLTAIGRRLERLPHGVNADVERMARVHAVQHAYDQLVAAL
SPARAAASDVSDIARQIEEFRVSLWAQQLGTPRPVSEQRIYRAIDAVLG
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaaccgtcccgcgatgagctgaaagcactgcgcgggcggctcgaccacctgacg
atccacgacgccgcccggttcgggcgccggctgcgctccatgcgcaacgtcacgccggaa
caggtgcagcggatcacccagcagatcgcgtccgccgaagcgctcgtcgccacccgcgag
tccgccgtcccccaggtcacgtacccggacctgccggtcagcgaccgtcgcgacgacatc
gccgccgcgatcaccgcgaaccaggtgatcgtcgtcgccggcgagaccggctccggcaag
accacgcagctgccgaagatctgcctcgagctgggccgtggcgtgcgcggcacgatcggt
cacacccagcccagacgcctcgccgccaggaccgtggcccagcgcgtcgccgacgagctg
ggcaccccgctcggcgacgtcgtcggatacaccgtgcggttcaccgaccaggccagcaac
cgcaccctggtcaagctgatgaccgacggcatcctgttggccgagatgcagcgcgaccgc
aggctgctcgcgtacgacacgctgatcctcgacgaggcccacgaacgtagcctcaacatc
gacttcctgctggggtacctgcgcgaactgcttccccgccgacccgatctcaaggtgatc
gtgacgtcggcgaccatcgagccggaacgcttcgccaagcacttcgccgaccgccacggc
gtccccgcgcccatcgtcgaggtctccgggcgcacctatcccgtcgagatccgctatcgg
cccttggaagtcgaggtcaccgacggcgtcgacgccgacgatccggatgaccccgaccgc
gagatcgtccgcaccgaggtgcgcgacccgaccgaggcgatcgtcgacgccgtgcgggaa
ctcgaggccgagccgcccggcgacgtgctggtgttcctctccggcgaacgcgagatccgc
gacaccaccgaggcgttgcgcgacgcgatgcgcggcgaccggttccagaccgaggtgctg
ccgctctacgcccggttgccgacggccgatcagcagaaggtgttcgcgccgcacaccaac
agaagagtcgtgttggccaccaacgtcgccgagacgtcgctgacggtgcccggcgtgcgc
tacgtcgtcgatcccggtacggcgcgcatctcgcgctacagccgcaggacgaaggtgcag
cggctgccgatcgaaccgatctcgcaggcgtccgcgtcgcagcgcgcgggccgctccgga
cgcacggccccgggcgtgtgcatccgcttgtattcggaagcggacttcgaatcccggccc
cgctacaccgatcccgagatcctgcgcaccaacctggccgcggtgatcctgcagatggcc
gcgctcgggttgggcgacgtcgaggcgttcccgttcctcgacccgccggaggcgcgcagc
atccgcgacggcgtcacgctgctgcaggaactcggcgccttcgaccgcaacggcgcgatc
accgacgtgggacgacggctggccaggctaccgctggacccgcgcatcggacgcatgatc
ctgcaggccgacaccgagaactgcgtgcgcgaggtgttgatcctcgcggcggcgctgtcg
attcccgatccgcgggagcggcccgtcgacaaggaggaggcggcccgccagaagcatgcc
cggttcgccgacgagcactccgacttcgtgtcgttcctcaacctgtggcggtacgtgtcc
gagcagcgcagggaacgctccggcagctcgttccggcggatgtgccgtgaggagttcctg
cactacctgcgcatccgagaatggcaggacctcaccggtcaattgcgcagcatcgccaag
gatctcggcatccacgaacaggacgagcccgccgacccggccagcgtgcacgccgctctg
accgccgggctgctgtcccacgtggggctgcgcgagggcgactcccgcgagtaccagggc
gcccgcaacaccaggttcgtgctcgcgccgggctcggtgctgacgcgccgtccgccgcgc
tggatcgtggtcgcggatctggtggagaccagccgcctgttcggcagggtcgccgcccgg
gtggaacccgagctggtggagcgcgtcgcgggagacctggtgcagcgcacccacagcgag
ccgcactgggatgcgaaccgcggggcggtgatggccttcgagcgcgtcacgctcttcggc
ttgccgctggtggcgaggcgccggatcggctacgcgcagatcgatcccgtgctgtcgcgc
gagctgttcatccggcatgcactggtggaacgtgactggcagacccgtcaccacttcttc
cgcgacaacggccagctgctcgaggaactcgccgagatcgaagagcgggccaggcgccgc
gacctgctggccggcgatgacgagatctacgccctctacgatgcccgaatcccgccggac
gtggtgtcggcgaggcacttcgacgcctggtggaagaagcagcggcaccggacgccggac
ctgctgacgttcacccgcgccgacctgttgcgcggcgacgatgcgctcgaccagcccgac
cggtgggaggcgggcgacctgtcgctgccgatcacctacaagttcgaacccggcgccgag
gacgacggcatcacggtgcacgttcccgtcgaggtgctcgcccgcctcggcggcgacgag
ttcgcctggcacgtgccggcattgcgtgaggagctgatcgccgcgctgctcaagtctctg
ccgaaggaactgcggcgcaacttcgttccggtccccgacacggccagggctctgctgtcg
acgctcgatcctggcgaccagccgctgctcgacgcgctgcagcaggagttgcgcaggcgc
accggtgttctggtgccgatcgacgccttcgacgtggagaaggtacctgcccacctgcgc
gtgacgttcgcggtcgagggatccgacggctcggaggtggctcgcggcaaggatctcgac
gggctcaaggaacggctcgacgcaccgatgcagcgcgcggtggccgacgtcgtcgcaggc
ggtctggcgcgaaaggggttgcgcggctggcccgacgacctcgacgaggtgccgcgggtg
atcgacagcaccggcgggcgcaacaccgtgcggggctaccccgcgttcgtcgacgtgggc
aaggccgtggacctgacggttttcgcctccgaggtcgagcagcgggcgaggatggcaccg
ggcgtgcggcggctggtgcgcctcgacgtcgcgtcaccggtgaaggcggtggagcgggca
ctcgacctgcgcacgcgactggtcgtcgccgacaatcccgacggctcactctccgcgctc
atcgacgactgcgccgacgccgtcaccgacaccctgatcaccacacccgtatggacgaag
gcagaattcgccgcgttgcggaccaaggtctcgaagacactggcgctcagcaccatcgac
gtcatcggccgggtggcgaaggtgctcggtgcggcgcacgacgtccgcctcgccctgccc
gaacggccggtgcccgcgcaggccgcgtcgatcgccgacgtccgcgcgcagctggcgcgg
ctgctcccggccgggttcgtgacggcgacggggatcgcgcatctggccgacctcacccgg
tacctcaccgcgatcgggcgacggctggaacgcctgccgcacggcgtcaatgccgacgtc
gagcggatggcccgcgtgcacgccgtgcaacacgcctacgaccaactcgtcgcggcgctg
tcaccggcccgcgcggcggcatccgacgtgagcgacatcgcccgccagatcgaggaattc
cgggtgagcctgtgggcgcagcagctcggaaccccgcgcccggtcagcgagcagcgcatc
taccgcgcgatcgacgcggtgctgggctga
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