Mycolicibacterium arabiense: MARA_52770
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Entry
MARA_52770 CDS
T07049
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
marz
Mycolicibacterium arabiense
Pathway
marz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MARA_52770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marz03400
]
MARA_52770 (mfd)
Enzymes [BR:
marz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARA_52770 (mfd)
DNA repair and recombination proteins [BR:
marz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MARA_52770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBY51809
UniProt:
A0A7I7S672
LinkDB
All DBs
Position
5008061..5011720
Genome browser
AA seq
1219 aa
AA seq
DB search
MNAPGYDHVQTPIAGLVSLALTDPGLRDVTQRAAAGATEGALVGPAAARLFVAAALAEAG
PLLAVTATGREADELANELRAVLGDAVAMFPSWETLPHERLSPGVETVGARMKVLRRLAH
PDDTRLGRPLRVVVTTARSLLQPMPPDLAQVEPVTLTVGSDADFDGVIERLVELAYTRVD
MVAKRGEFAVRGGILDVFAPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVESLIAM
PCRELLLTDDVRKRAAALAAEQPHDDNRVSGTVGEMMAKLSEGIPVEGMESLLPVLRPAD
LSLLTDHLPANSPVLVCDPEKVRTRAADLVKTGREFLEASWSIAAMGADAPIDLEQLGGS
GFRSLEEVRANAAAGGHPWWTLSQLGDPSAITLDIRPAPSARSQQNTPDFQDEVFAMLRA
HVATDGLAAIVAPGAGTAHRVVEQLGEADVAAAMLEPGEAPKPGVVGVLKGPLCQGVVLP
GAKLVVITEADLTGNRVTATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTER
TVGGARREYLVLEYASAKRGGGSDKLFVPMDALDQLSRYVGGEAPSLSKLGGSDWANTKT
KARKAVREIAGELVSLYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETVDQLTAITEVKSD
MEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSQRMTG
FPVTVKGLSRFTDPSDSRKTLEGMRDGSVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFG
VEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERSPVLTYVGPHDD
KQVAAALRRELLRDGQAFYIHNRVRSIDSAAAKIRDLVPEARVVVAHGQMPEEQLERTVE
GFWNRDYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL
YPAEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLY
VRLVGEAVEAFRAAVDGETVATQEEPKDVRIDLPIDANLPPDYIGSDRLRLEGYRRLAAA
NDEEAIAAVVEELVDRYGPLPEPARRLVAVARLRLLCRQYGVTEVGGVSESTVRISPLPL
QDSQQLRLKRMYPSATYRATTSTITMPIPRAGTGIGAPRIRDLELAGAVAELLLALDGRP
KTDVDITNFDSWRKEQVSQ
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaccggggtatgaccatgtccagaccccgatcgccgggctcgtctcgcttgcg
ctgaccgaccccgggctgcgcgacgtcacgcaacgcgctgctgccggtgccaccgagggc
gcgctcgtcgggcccgctgccgcacggctgttcgtcgccgccgcgctcgccgaggcgggc
ccgctgctggccgtgaccgcgaccggccgggaggccgacgaactcgccaacgagctgcgg
gcggtcctcggggacgccgtcgcgatgttcccgtcgtgggagaccctgccgcacgaacgc
ctgtcgccgggcgtggagacggtcggcgcacgaatgaaggtgctgcgcaggctcgcccac
cccgacgacactcggctcggccgtccgctgcgggtggtcgtcaccaccgcgcggtcactg
ctgcagccgatgccgccggacctggcccaagtcgaacccgtgacgctgacggtcggttcc
gatgccgacttcgacggcgtgatcgagcgcctcgtcgagctggcctacacccgtgtcgac
atggtcgccaagcgcggcgagttcgcggtccgcggcggcatcctcgacgtgttcgcaccg
accgccgagcatcccgtgcgcatcgagttctggggagacgaggtgtccgagatgcggatg
ttctcggtcgccgaccagcgctcgatcccggagatcgaggtcgagagcttgatcgcgatg
ccgtgccgcgaactgctgctgaccgacgacgtgcgcaagcgtgccgccgcgctggccgcc
gaacagccccacgacgacaaccgcgtcagcggcaccgtcggcgagatgatggccaagctg
tccgagggcatccccgtcgaggggatggagtcgctgctgccggtgttgcgtcccgccgac
ctgtcgctgctgaccgaccacctgccggcgaacagcccggtgctggtgtgcgatccggag
aaggtgcgcacccgcgcggccgacctcgtcaagacgggccgggagttcctcgaggcgtcg
tggtcgatcgcggccatgggtgccgacgcaccgatcgacctcgaacagctgggcggctcg
gggttccggagcttggaggaggttcgggcgaacgccgcggcgggcgggcacccgtggtgg
acgctgagtcagctcggcgacccgtcggcgatcaccctcgacatccggccggctccgtcg
gcacggtcgcagcagaacaccccggacttccaagacgaggtgttcgcgatgctgcgcgca
cacgtcgccaccgacgggctggcggcgatcgtcgcgcccggcgcgggcaccgcgcaccgc
gtcgtcgagcagctcggcgaagccgacgtcgccgcggcgatgctcgagccgggcgaggct
cccaagcccggcgtcgtcggggtgctcaagggcccgctgtgccaaggcgtcgtgcttcct
ggggccaagctcgtggtgatcaccgaggccgacctgaccggcaaccgggtgacggccacc
gagggcaagaagctcgccgccaagcggcgcaacgtcgtcgacccgctggcgctgaccgcg
ggcgacctggtggtgcacgaccagcacggcatcggccggttcgtcgagatgaccgagcgc
accgtcggcggcgcccgccgcgagtacctggtgctggagtacgcgtcggccaagcgcggc
ggcgggtcggacaagctgttcgtgccgatggacgccctcgaccagctgtcccgctacgtc
ggcggggaggcgccctcgctgtcgaagctcggcggcagcgactgggccaacacgaagacc
aaggcgcgcaaggcagtacgcgagatcgcaggcgagctggtgtcgctgtacgccaagcgt
cagtccgcgcccgggcatgcgttcggaccggacacgccgtggcagaacgagatggaggac
gcgttcgggttcaccgagaccgtcgaccagctgacggcgatcaccgaggtcaagagcgac
atggagaagccggtcccgatggaccgggtcatctgcggtgacgtgggctacggcaagacc
gagatcgcggtgcgcgcggcgttcaaggcagtgcaggacggcaagcaggtcgccgtgcta
gtgccgacgacgctgctggccgaccagcacctgcagacgttcagccagcggatgaccggc
ttcccggtgacggtgaagggcctgtcgcgcttcaccgatccgtcggactcccgcaagacg
ctcgagggcatgcgcgacggctcggtcgacatcgtgatcggcacgcaccggctactgcag
accggtgtcacgtggaaggacctcggcctggtcatcgtcgacgaggagcagcggttcggc
gtcgagcacaaggagcacatcaagtcgatgcgcacccacgtcgacgtgctgaccatgagc
gccacgccgatcccgcgcaccctggagatgagcctggcgggcatccgcgagatgtcgacg
atcctcaccccacccgaggagcggtccccggtgctgacctacgtcggcccccacgacgac
aagcaggtggcggcagcgctgcgccgcgaactgctgcgcgacggtcaggcgttctacatc
cacaaccgggtccgctctatcgactcggccgctgccaagatccgcgacctggtgcccgag
gcccgcgtcgtcgtcgcacacgggcagatgcccgaggagcagctggagcgcacggtcgag
gggttctggaaccgcgactacgacatcctggtgtgcacgacgatcgtcgagaccggactg
gacatctcgaacgcgaacacgctgatcgtggagcgcgcggacaccttcggtctgtcccag
ctgcatcagctgcgcggtcgcgtcggacgtagccgggagcgcgggtacgcgtacttcctg
tacccggcggaggttccgctgaccgagactgcctacgaccggctggccaccatcgcccag
aacaacgaactgggcgcaggcatggccgtggccatgaaggacctcgagatccgcggcgcg
ggcaacgtgctgggcgccgagcagtccggccacgtcgccggggtcggcttcgacctctac
gtgcgcctggtcggggaggccgtcgaggcgttccgcgctgccgtcgacggggaaaccgtt
gcgacgcaggaggaaccgaaggacgtccgcatcgacctaccgatcgacgccaacctgccg
cccgactacatcggcagcgaccggctgcggctggagggctaccgccggctggcggcggcc
aacgacgaggaggccatcgccgcggtcgtcgaggaactcgtcgacaggtacggcccgctg
ccggagcctgcgcggcggttggtcgcggtggccaggctgcggctgctgtgccgccagtac
ggcgtgacggaagtgggtggcgtgtcggagtcgacggtgcgcatctcgccgttgccgctg
caggattcgcagcaactgcgactcaagcggatgtaccccagcgcgacgtaccgcgcgacg
acgtcgacgatcacgatgcccatcccgcgggccggcaccggcatcggcgccccgcgcatc
cgggacctcgaactggccggtgccgtggccgaactgctgttggcgctcgacggcaggccg
aagacggacgtcgacatcaccaacttcgattcgtggcgcaaagagcaggtgtcgcaatga
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