Myxocyprinus asiaticus (Chinese sucker): 127410922
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Entry
127410922 CDS
T08782
Name
(RefSeq) collagen alpha-1(XII) chain-like isoform X1
KO
K08132
collagen type XII alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
masi00535
]
127410922
Proteoglycans [BR:
masi00535
]
Extracellular matrix (ECM) proteoglycans
Others
127410922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Collagen
Laminin_G_2
Copine
Motif
Other DBs
NCBI-GeneID:
127410922
NCBI-ProteinID:
XP_051502128
LinkDB
All DBs
Position
20:complement(43118985..43283226)
Genome browser
AA seq
3026 aa
AA seq
DB search
MSWRRPSYQIQGYRIQVVSDTDDFKDFTLPALATNTSITDLTPDVDYSVSINSYDGTEES
IPILGQITIQSSNTSGTARKPQSDAIKCSVSAIADLVFLVDGSWSVGRENFKFIRSFIRA
LAGAFDIGEDKTRVAVVQYSTDTRTEFNLNQHYRRPDLFRAIKNLPYKGGNSMTGDAMDY
LVKNSFTEAAGGRKNFPKVAMIITDGKSQDPVEEYAKRLRNIGVEIFVLGIKDADEDELK
EIASTPHNKHVYNVPNFDMINQVQKKLITEVCSGVEEQLNSLVSREEVVEPALKLSVTDI
SSKSMRVTWDASPGDITGYKLQLIPVIAGAKRQELYTGPRITLANVRDLSPETEYKISLF
ALKGLTPSEPKIAMEKTQPVRISTECSLEVDVQADIVLLVDGSYSIGLANFAKVRAFLEV
LVNSFDIGPNKVQISLVQYSRDPHTEFALNKHHDIAAVVKAIRNFPYRGGSTNTGKAMSY
VREKIFVSGRGARDNVPRVMVLITDGKSSDSFRDSANKLRDADVEIFAVGVKDAVRSELE
AIANVPADNHVFEVEDFDAFERISKELTTSICLRIEQELHNIKKRSLIPPKSLSFSEVTS
RSFRASWISEAEDVLSFLVRFRPAADITGDYISLVVSHDTMTTTLPNLIPLTTYEVNVIA
QYDKGDSFPLTGEETTLEEIGSVRNLMVSEETVDSFRVSWKAALGAVLRYRLFYEPMAGG
NKLEAETDGSQVTIVLQELLPITTYRVTVHAEYATGMGPSMDTEGTTKEVLGSPRDLKVF
NETVSSMRLSWRAAPGNVLQYHVAYKPDGGERKEIFVKGDTTSTILKNLLSDTEYELFVS
ARYSSGLGDPLLGTGTTLEELGSPSNLVTSDVTESSFVASWTAAPGNIRLYRVTWKSLFS
EEAGEKTVPGDITTTVLDGLTPETRYKVSVYAAYSREEGRPLHGEETTDVSAAVRVLTVS
DETEKTMRVMWQPAPGNVVNYRVLYKPQGDGRQLVSKTPGGSNTIMLRRLQPLTTYDITV
VPVYKFGDGRARQGEGTTLSLYKAPRNLQTSEPTKTSFRVTWDPAPGDVKGYKVTFHPIG
DEVDLGQLLVGPYDNTVVLEELRAGTKYTVSVFGMFDGGESMPLAGEEKTTLSDAPEPPP
FLTPDVMCKTTAQADIVLLIDGSWSIGRLNFKTIRSFIGRMVGVFDIGPDRVQIGLAQYS
GDPKTEWHLNAHRTRAELLEAVANLPYKGGNTLTGLALNYILQNNFKANVGMRPNSRKIG
VLVTDGKSQDDITVNSQNLRDQDIELYAIGVKNADEGELRTIASDPDDIHMYNVADFSFL
LDIVDDLSNNLCNSVKGPGEGPEPPTDLVTSDVTHYSFRATWVGPDGPVDKYRIEYVSTA
GGEPQQLFVDGTVTTVVLESLIPLTEYIVKVYSVVGEESSDPLKGMETTLPLSAVRSMNI
YRVRSTTMNVRWDAAEEATSYMVVYNALNATEPSVKKEMRVKGKVTDVQLKNLHPNTAYN
IFIFALHGDTASEPLADQGVTLPLPPAGELRITDVTHSTMLLDWDAASGAVRKYIITYKP
EDGESKELEVDGDVTTSGLVNLISQTEYDVAVTPVYDSRMGSPMLNQATTDVVPAPKNLR
FSQVTQTSFRAHWEHGAPDVALYRIGWTKSGENNFQYDILNSDDTTTLLENLEQDTMYDV
SVTAIYPDESESEDLLGSQRTLSKIITPAPSGPPQNLQVFNATTTSLTTKWDHAPGRVQN
YRITYVPVAGGRSQFTQIGGKKNTVILQKLTPDTPYSITVAAVYANGDAKDISGQGKTLP
LGSVRNIQVTDPTISTLNVRWEPAEGSVRQYRIYYQPVTGGAEDMVQVPGTTTSKVLKNL
LSDTEYTVTVVPVYAPGEGKRMSENGKTLVRTPARNIQTYNPTANTLNVRWEPASGEVLQ
YRVVYAPLTGVRPSESVLVPGNTHTTMLQQLNPDTEYSVSVVALYADGEGSSVSDNGRTL
PRSGPRNLRVYDPTTSTLTVSWEHADGPVQQYRIGYAPTTGDPIEEFTSVPGNRNSVILQ
NLQPDTPYIINVEAIYQDGPGGRLSGDGNTLGLLEPRNLRVSDEWYTRFRVSWDPAPARV
NGYKLVYTPVGTTNTMEVFVGDVTTYNLHSLQPGTTYDLKVYAQYDAGMSGALIGQGTTL
YLNVTDLSTYNVGYDSFCIRWTPHRAATSYRLKVNPFIPSNRGAQEVTITAAESNYCFDE
LMPDALYNATVYTQTPNLEGPGVSVKERTLVKPTQPPTTPPAPPPPPTIPGALEVCKGAK
ADLVFLIDGSWSIGDESFVKVRQFVFSMIGAFDVISHEGMQVSFVQYSDDAKTEFKLNTY
HDKGVVLSALQMVNYRGGNTKTGAALKHVVEKVFTSDSGMRRTVPKVLVVVTDGRSQDEV
KKSAAKLQHSGYSVFVVGVADVDLAELRNIGSKPSERHVFVVDDFDAFTKIQDNLITFIC
ETATSTCPLIYLDGFTSPGFRMLEAFNITDRTFAGINGVSMETGSFNSYIAYRLHKDAFI
SQPTKEIHPDGLPPSYTLILLFRLLPDTTKDAFDIWQIADKNNNPEVGLTIDPSSQVISF
YNKDTRGEIQKVSFDNDHVKKIFHGSFHKIHISISQKNVKLNIDCQEVAEKEIKAANNIS
TDGYEVLGKMAKSGGSKKQSTTFQLQMFDIVCSLGWTSRDKCCDIPAMRDEAKCPALPHS
CTCAQDSIGPPGPGGPQGSPGAKGPRGERGESGPTGPMGPHGEQGLPGQMGPPGPQGPSG
LSIPGEPGRPGPKGDPGDSGLPGQRGQIGAPGPLGPVGPPGARGPPGNEGPSGPRGPSGP
MGPPGSPGMQGITGIPGKPGETGLSGAVGMKGEKGERGDTASQNMLRSVARQVCEQLVNR
QMSRIDMMLNQIPSNYRSNSPGPAGPPGPPGNQGSRGEPGQTGPNGFPGNPGLPGSPGER
GMPGEKGERGSPGIATRGQRGLPGPPGPPGQSQIGPPGPTGSPGPNGPPGRQGSPGIRGP
PGPPGYCDSSQCVGIPYNGQGYQGFA
NT seq
9081 nt
NT seq
+upstream
nt +downstream
nt
atgtcatggaggaggccttcatatcagatacagggctacagaatacaagtagtatcagat
acagatgattttaaagatttcactcttcctgccttggccacaaacacatctatcacagat
ctgactccagatgtagactattcagtgtcaatcaattcatatgatggcacggaagaaagt
attcctatccttggccaaataactattcaatccagtaacaccagtggaacagctaggaaa
ccgcagtcagatgccattaagtgttcagtaagtgctattgcggatctagttttcctggtg
gatggctcttggagtgtgggaagagaaaactttaaattcattcggagtttcattagggcc
ttggcgggagcgtttgacattggggaggataagactagagtggctgtggtacagtacagc
acagacaccaggacagagttcaacctgaaccagcattacagacgaccagatcttttccga
gccatcaaaaatctgccctataagggtggtaatagcatgacaggtgatgcaatggactat
ctggtgaaaaactcttttacggaagcagctggaggcaggaaaaacttcccaaaagtggcc
atgatcatcacggatggaaaatctcaggacccagtggaggagtatgccaaacggctgagg
aacattggagtagagatctttgtcctgggtatcaaagatgcagatgaggatgagttgaag
gagattgcctccactcctcacaacaagcatgtctacaatgttccaaactttgacatgatc
aatcaggtgcagaagaagctcatcactgaggtgtgttctggcgtggaggaacagctaaat
tcccttgtaagcagagaggaagttgtagaaccagctttaaaactcagtgtaactgatatc
tcctccaaatctatgagggtcacgtgggatgcatctccaggagacatcacaggctataaa
cttcagctcatccccgtgatagcaggtgccaagaggcaggagttatacacagggcccagg
atcaccttggccaacgtcagagacctgtctcctgagacagaatataagatcagtctgttt
gccctcaaaggtttaacccccagcgagccaaaaatagccatggagaagacacagcctgta
agaatctccacagagtgttctcttgaagtcgatgtccaagctgatattgtcctcctggtg
gatggctcatacagtataggactggctaactttgctaaagttagagccttcctagaagtg
ctcgtcaattcctttgatatcggacctaacaaggtgcagatcagcttggttcagtacagc
agggatcctcacactgagtttgccctgaacaagcaccatgacattgcagctgtggtcaag
gcaatacgcaacttcccataccgtggaggctccaccaacactgggaaggccatgagctac
gtgagggaaaagatctttgtttcaggccgtggcgctcgtgataatgtgccacgggtcatg
gtgctcatcacagacggcaagtcctcagactctttcagagactcagccaacaagctcagg
gatgcagacgtggagatctttgctgttggagttaaggatgctgtgcgctccgagttggag
gccattgctaacgttcctgccgataaccatgtttttgaggtggaagactttgatgccttt
gagcggatttcaaaggaactgaccacatctatctgcctaaggattgagcaggagctccat
aacatcaagaaaagaagtttgataccaccaaagtcactgagcttctctgaggtgacctcc
aggagctttagggcctcatggatttctgaggcagaggatgtcctgtcttttctggtgcgt
ttcagaccggcggctgatataacgggagactacatctctttggtggtttctcatgacacc
atgactaccactctgccaaatctaatccccctgaccacctatgaggttaatgttatcgcc
cagtatgacaaaggagacagctttcctttgacgggagaggagacgactttagaagaaata
ggcagtgtccgcaacctcatggtgagtgaggagactgtggacagcttccgtgtgtcatgg
aaagctgctctgggagcagtattgaggtacagactgttctatgagcctatggctggagga
aataaattggaagcagagactgatgggagtcaggtcacaattgtgctccaagagctgcta
cccatcaccacctaccgcgtcacagtgcacgctgagtatgcaacggggatggggccttca
atggacactgaaggcaccaccaaagaagttctgggctctccacgtgacctgaaggtcttt
aacgagactgtgtccagcatgaggctctcgtggcgggccgctccaggaaatgtgcttcaa
tatcatgtggcctacaaacctgatggtggcgaaaggaaagagatatttgttaaaggagac
acaacaagcactatattgaaaaatctgctgtccgacaccgagtatgagctgtttgttagt
gctcgctactcctctggtcttggtgatccacttttgggaacaggcaccactctggaagaa
cttggttctccttcgaacctggttacttcagatgtcacagagagcagttttgtagcatcc
tggactgccgctcctggcaacattcgcctttatcgggtcacctggaaatccctcttttca
gaggaagctggcgaaaaaacggtccctggggacattaccaccactgttctggatggcctg
acaccggagacccgctacaaggtttctgtgtatgctgcctacagccgggaggaggggaga
ccgcttcatggagaggaaacgacagatgtgtcagctgctgtgagagtacttaccgtatca
gatgaaacagaaaagaccatgcgggtgatgtggcaaccagcgcctggcaatgttgtcaat
tatagggtgttgtataaaccacagggggatgggcgtcagttggtctccaaaacaccaggt
ggaagcaacaccatcatgctgagacggctgcaacctttgaccacttacgatatcactgtg
gtacctgtctataagtttggtgatggaagagcaaggcaaggagaaggaaccacattgtct
ctatacaaagctcccagaaacctgcaaacttcagaacccactaagaccagtttcagggta
acatgggaccctgctcctggagatgtgaagggctacaaggtcactttccaccccattggg
gatgaagtggacctgggacagctgctagtcggcccctatgacaacacagtggttctggaa
gagctaagggctggcactaagtacacagttagtgtgtttggcatgtttgatggaggggag
agtatgccactggctggagaggagaagaccaccctctctgacgcccccgaacctccaccc
tttctgaccccagatgtaatgtgtaaaactacagctcaggccgatatcgtcctgctcatt
gatggatcttggagtatcggccgcctgaacttcaagaccataaggtctttcatcggccgc
atggtgggtgtgtttgacatcggcccggatcgtgtccagattggtctggcgcagtacagt
ggagacccaaagacagagtggcacctaaacgctcacagaaccagagcagaacttctagag
gctgtggccaatctgccctacaaaggaggaaacactttgactggtcttgctttaaattac
atccttcagaacaatttcaaagctaacgttggtatgcgtccaaactcccggaagatcggc
gtcctggttactgatggcaagtcacaggatgacatcacagtcaactctcagaacctgcgc
gatcaggatatcgagctgtatgccattggtgtaaagaacgcagatgagggcgagctgaga
accattgcctctgatcctgatgatatccacatgtacaatgtggcggacttctccttcctg
ttagacatcgtggatgacctgtcaaacaacctgtgtaacagtgtcaagggtccaggagaa
ggccctgaaccacccactgatctagtgacctcagatgtgacccattactccttccgtgcc
acctgggttggccctgacggaccagtagacaagtacagaatagagtatgtgagcactgca
ggaggagaacctcaacagttgtttgttgatgggacggtgacgactgtggttttggagagt
cttattccactgacggagtacatagtgaaggtttactcagtagtgggagaggagagcagc
gatcccctcaaaggcatggagacgacattgcctctcagtgctgtgaggagcatgaacatc
tacagggtgcgctccaccaccatgaatgtgagatgggatgcggctgaagaggccacgagc
tacatggttgtgtacaacgcccttaatgccactgaaccctctgtgaaaaaggagatgcgt
gtgaaaggaaaggtcactgacgtccagctgaagaaccttcatcccaacacagcctacaac
attttcatcttcgccctgcacggcgacactgccagtgaacctcttgctgatcagggggtg
accctgccacttcctccagccggtgagttgaggatcacagatgttactcacagcaccatg
ctgctggactgggatgctgcatccggcgccgttcgcaaatacatcataacttacaagcca
gaggatggagagtccaaggagcttgaagttgatggagatgtgacaactagtggactggtt
aatctaatttcacaaactgaatatgatgttgctgtcactccagtctatgattccaggatg
ggaagcccaatgcttaaccaggctactacagatgttgtcccagctccaaagaatttgagg
ttctcccaggtgacccagaccagtttcagggctcattgggagcatggtgctcctgacgtt
gccctttatcgcattggttggacaaagagtggagagaacaacttccaatatgatatcttg
aacagtgatgacaccaccactctcctggagaatcttgaacaagacactatgtatgacgta
tctgtgactgccatttatcccgatgagtctgaaagtgaagatctgctgggtagccagcgc
acattgtccaagatcataacacctgctcctagtggaccccctcaaaacctccaggtgttc
aatgcaaccaccacctcccttaccaccaaatgggatcacgccccaggccgagtccagaat
tacaggattacctacgtaccagttgcaggaggaagatcacaatttacacagattgggggg
aagaagaacacagttattctgcagaaactgactccagatacgccctactctatcactgtt
gctgcagtctatgcaaatggagatgccaaagacatttctggccaaggaaagacattaccg
ctgggcagtgtgagaaacattcaggtcacggaccccaccatcagcactcttaatgtccgc
tgggagccagccgaggggagcgtacggcagtacaggatttactaccagcccgtcacaggg
ggcgcagaggacatggtccaggttcctggaaccaccaccagtaaggttctgaagaacctg
ctgtccgatacggagtacacggtaaccgtggtgccagtttatgctcctggcgagggcaag
cgcatgtcagagaatggaaaaaccttggtgcggacccctgccaggaacatccagacttac
aaccccaccgcaaacaccctgaacgtgcgctgggagccagcttccggagaagttctgcag
taccgtgtcgtctacgccccgctcaccggagtccgtccctctgagtctgttcttgtccca
gggaacacccacactaccatgctgcagcagctaaatccagacacagagtattcggtcagt
gtggtggccctgtatgctgatggagagggctcttcagtgtctgataatggaagaacattg
ccccgcagtggccccagaaacctgcgggtgtacgatccaaccacaagcacgttgacagtg
agctgggagcatgcagacgggcccgtgcagcagtaccgaattggctatgcaccaaccact
ggagatcccattgaggaatttacaagtgtccctggaaacagaaattcagtcatcttgcaa
aacctacagcctgacactccttacatcatcaacgtggaggctatttatcaagatggccct
ggaggacgactctctggagatggaaatacgttgggtctcctggagcctcgtaacctacgt
gtttcagatgaatggtacactcgattccgtgtgtcttgggatccagcacctgcacgggtc
aatggttataaactggtctatacaccagtgggcacgactaacaccatggaagtgtttgtt
ggagatgtcactacatataacctgcacagccttcagcctggcaccacgtatgacctgaaa
gtttacgctcagtatgacgcaggcatgagtggagcactgattggacagggaaccactttg
tatctcaatgtaacagacctctccacatacaacgtcggttatgactcattctgcatcaga
tggactcctcatcgggctgctacttcttacagactaaaagtcaatcctttcatcccatct
aatcgtggggcacaggaggtcactattaccgctgctgagagcaattactgttttgatgag
ttgatgccggacgcactgtacaatgccactgtctacacccagacccccaacctggaggga
ccaggagtcagtgtcaaagagcgaacattggtgaaacctacccaacccccaacaacaccc
ccagcacctccgccaccacccaccatccctggtgcactcgaagtgtgcaaaggtgccaag
gctgacctggtgttcctgatcgacggttcttggagtattggagatgagagctttgttaaa
gtccgccagtttgtgttcagcatgattggagcctttgatgtcatcagccatgagggcatg
caggtgtcttttgtgcagtacagcgatgatgctaaaactgagtttaagctgaacacctac
catgacaagggagttgttctgtctgcccttcagatggtcaactacagaggaggaaacacc
aaaacaggtgctgcattgaagcatgttgtagagaaggtgtttacctcagacagtggtatg
aggaggacagttccaaaggttctggtagtagtcacagatggacgttctcaggatgaggtg
aagaagagtgctgctaaactacagcattcaggctacagtgtgtttgtggtgggtgtcgct
gatgtagacttggcagaactaaggaatattggaagcaagcccagcgagagacatgtcttt
gtcgtcgatgactttgatgcattcacgaagattcaagacaacctcattacgttcatctgt
gaaacagcaacatccacatgtcctttgatttaccttgatggattcacatcaccaggcttc
aggatgctggaagcttttaacatcactgacaggacatttgctggcataaatggagtctcc
atggaaactggttccttcaacagttacatcgcatacagactccataaggatgcattcatt
tcccagccgacaaaggaaatccatccagatggtcttcctccctcctacaccctcatcctt
ctcttccgcctcctccctgacaccaccaaggatgcgtttgatatatggcagattgcagat
aagaacaataaccctgaggtcggacttaccattgacccttccagtcaagtcatttcattc
tacaataaggacaccagaggtgaaattcagaaagtctcctttgacaacgaccacgtgaag
aaaatcttccacggcagtttccataagattcacatctcaatttcacagaaaaacgtcaaa
ctgaacattgactgccaagaagtggctgagaaagagatcaaagcggccaacaacatctcc
acagatggctatgaagtccttggcaaaatggccaaatctggcggttcaaagaagcagtcg
accacattccagctccagatgtttgatattgtctgcagtttgggctggacaagtcgagac
aaatgttgtgatattccagcaatgcgagatgaagccaaatgtcctgctcttcctcactcc
tgcacatgcgctcaggacagtattggtcctccaggcccaggtggccctcagggcagccct
ggtgcaaaaggtccacgaggtgagagaggagagtctggcccaacgggtccaatgggtcca
catggggagcagggtctgccagggcaaatgggaccaccaggcccacagggccccagtgga
ttgtctattcctggcgaaccagggcggcccggacctaagggagaccctggtgactcaggc
ttacctggacaaagaggccaaattggtgctccaggtcctctcggccccgttggacctcct
ggagcgaggggtccaccaggaaatgaaggcccatctggaccaagaggtccatcaggacca
atgggccccccagggtcacctgggatgcaaggaatcacaggaataccaggaaaacctgga
gagactggcctctcgggagctgttggcatgaaaggagagaaaggtgaaaggggagatact
gcgtcacagaatatgttgcgctctgtagcaagacaagtctgtgaacaactagtcaacaga
caaatgagcagaatcgatatgatgctgaaccagatccccagtaactacaggagcaacagt
cctggtcctgctggacctccaggccctcctggcaaccagggatctcgtggagagccaggt
cagactggacccaacggtttcccaggaaacccaggtttgccaggatctccaggagaaaga
ggaatgcccggagagaaaggtgagagaggaagtccaggcattgccactcggggacagaga
ggattacctggaccacctgggccaccagggcagtcccagatagggccccctggtcccaca
ggctcacctgggcccaatggcccaccagggcggcagggttcccctggaatccgaggacca
cctggacctcctggatattgtgattcctctcagtgtgtaggcattccctacaacggacaa
ggataccaaggttttgcataa
DBGET
integrated database retrieval system
