Myxocyprinus asiaticus (Chinese sucker): 127412012
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Entry
127412012 CDS
T08782
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127412012
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127412012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127412012
NCBI-ProteinID:
XP_051503977
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All DBs
Position
21:35569468..35724427
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AA seq
713 aa
AA seq
DB search
MEDTKLRVSPQSTHDRTSVEHPYQKHLWTNWKDMYSKCVYTALCLISFGVCVLLYLRTSD
LQSRVLSLEKDRDPRISSWISLEQVEPVLWSRLDQILEEKLAARLPKIRAARDAPHSCLC
PPGPPVSRRDAFVDWIVGDKGSMGIPGRMGLKGNSGEKGAPGEPGLSIIGPRGPPGQPGT
RGFPGFPGPIGLDGKPGQNGPKGDMGPRGLKGIPGESGPKGEKGVCGDYTHRFKQGLQLK
TLAALRSSQALMLKQGEPGAQGPPGPPGPPGPPGIPGLTGASGPPGKPGEPGKPGKDPRM
LPGLKGEPGVPGQKGDHGETGPSGPEGPQGIKGDQGLKGEPGFPGAPGRKGQAGVSGIPG
KRGYKGEKGEPSAAGNGIKGEPGAPGLPGTAGPKGEKGDQGIKGAPGQDGPSGPRGPPGP
TGEPGKTLINNNENDIRNVHSMGPPGLPGPPGPPGLKGDVGLPGPPGIDGEKGPRGKPGE
QGPIGPPGPEGPRGEGGVMGFPGPKGDKGDMGPSGSPGLDGPTGENGVSGPAGPIGLPGP
MGQKGEAGEKGDKAELVYGPAGPPGPAGPVGPMGPPGLSGPKGEPGVGLRGEKGSPGQKG
DKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGERGEKGDMGVAGPIGPQGIPG
LVGPAGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggaggacacgaaattgagagtatcaccacagtccacccatgacaggacttctgtggag
catccttaccaaaagcacctttggacaaactggaaggacatgtatagtaaatgcgtgtac
accgcactgtgtttgatctcgtttggagtttgcgtgttgctttacctgaggacgtcggat
ctgcagtccagagtgctcagtttggaaaaagacagagatccccgaatctcgagttggatc
tctttagaacaggtggagcccgttctctggagtcgactcgatcagattttagaggagaaa
ttagcagcacgtcttccgaagattcgggcagcgcgggatgctcctcacagctgtctctgt
ccaccaggacctcccgtaagtagacgtgatgcctttgttgactggattgtgggagacaaa
ggatcaatgggtattcctggaagaatgggcttaaagggaaactcgggggagaagggagca
ccaggggagccaggtctatctatcattggcccacgaggacctcctgggcagcccggtact
agaggatttccaggctttccgggtccaatcggcttggatgggaaacccggacagaatggt
ccaaaaggtgatatgggtcctcgtggtctaaaaggaattccaggtgaatctggtcctaaa
ggggagaagggtgtatgtggtgactacactcacaggtttaagcaggggctccaactgaaa
acgctggcagctttgcgctccagtcaggctctgatgttgaagcagggtgagcccggagca
cagggaccaccggggcctcctggccccccagggcctccagggattcctggcttaactggt
gctagtgggcccccgggtaaacctggagaacctggtaaacctggtaaagacccaaggatg
ctaccagggctgaagggtgaacctggtgttcctggacaaaagggtgaccatggtgagaca
ggcccaagtggacctgaaggccctcagggtattaaaggagatcaagggctgaagggtgag
cctggttttccaggtgcccctggacgaaagggtcaggcaggtgtttctggtatccctgga
aagcggggctacaagggagagaaaggtgagcccagtgcggcaggaaatggcattaaaggt
gaaccaggtgccccaggactaccaggaacagctggacccaagggtgagaaaggtgatcaa
ggcataaagggtgcacctggtcaggatggcccatctggaccaaggggtccaccaggtcca
acaggggagccaggaaaaactttaatcaacaacaatgagaatgatattcgcaatgtgcat
tcaatgggccctcctggtctgcctggacctcctgggcctccaggcttgaagggtgatgtt
ggacttccaggtccccctggtattgatggggaaaagggtccaagaggaaagccaggtgag
cagggacccatcggccctcctggaccagagggaccacgaggagagggaggagtcatgggc
tttccagggccaaaaggagacaagggagatatgggcccctctggatcacctggtttagat
ggccctactggagaaaatggggtttcagggccagctggccccattggattgccaggccca
atgggtcagaaaggtgaagctggggagaagggagacaaagcagagctggtctacgggcct
gctggacctccagggcctgcagggccagttgggccaatgggacctccaggtttgtcagga
ccaaagggtgagccaggtgtaggcctgagaggagaaaagggatcacctggacagaaggga
gacaaaggagacagaggccatcttggactccctggggctcatggtttagacggcaggcct
ggtccagtgggtctaattggaccagctggagttcctgggccggcaggaccaaaaggagaa
aggggggaaaaaggagatatgggagtagcaggaccaattgggcctcaaggcatccctggt
ttagtaggaccagcaggattaaaaggaaaccggggggagaggggaaagaaaggcaacagg
ggggccaaaggggataagggagaccaaggagccccaggattagatgccccgtgtccgttg
ggcgatgatggtctgccagtaccagggtgttggaataaatga
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