Myxocyprinus asiaticus (Chinese sucker): 127413574
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Entry
127413574 CDS
T08782
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127413574
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127413574
NCBI-ProteinID:
XP_051506778
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Position
23:25070160..25098663
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AA seq
1559 aa
AA seq
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MDDLRGHRNYSGGSAGDRDFTETTISTRLTSLPPRGIIASSNKGMSSNAGPTSLEKNILT
QINDSSHISSSSVGVSADGLGSGSREFLAKELSVSEGRKADGASAVFESSFGIDSGSRVR
SSSESMRRTQESCSSPLFLERKNMTTQSRRYDGSSSDNSSPEMTRKDYGSTRGRSQSRET
EIRTRLQSASPSTRWTELDDVKKLLKRSRSASISPTRSPSSSPLPVPRRATVEAKISTKP
VEQYDTTILDTHLGSYTWKSSTLPSSVSTGTAYGLHSNTNNMSTGTSVVNSTSPSSLSVE
QYDTTILDTQLGSSAWKSSTLPSSVSTGTAYGLHSNTNNMSTGTSVVNSTSPSSLSVYGF
HNNLSPVSGVLTSSGVHTLSGYGVKKNYSSSPSSTFAVSTGVSTSGTGTRLHNENVAKRY
LMLEKENIPVKRETEELILTKDSGKQFTNSAPNGTAGSYSDASVKKETAVSYSERVPVKS
TSGTQYGSTSVSTKDKATYAEINKVKDDDDCKCGGGFWGCGPQCCSWWKWLLGFLLSLLL
LLGLLFGLIALSEEVKKLKARVGTLEGMSSSMSAHTSRLYASVDDINKYNSGASKLAYEN
SLGNENLGSAVYSDNSALQRNVQQILRAELQSEAMKAFLAPSIKGERGLPGPKGDAGSPG
PKGDNGFPGLQGPPGMPGHPGREGSKGEKGSAGEHGAEGPPGFRGRDGPTGPRGEPGPPG
AGEKGERGIPGFPGPPGPVGPPGLKGASGLHGEQGPQGFRGESGPAGLKGDRGLPGPPGI
KGDHGDKGDNGLPGVPGAAGRQGPAGEKGAKGSAGPQGADGEKGQRGEPGSIGLPGIRGP
PGPPGDAGQPGTPGIQGPPGIPGNPGSPGAKGETGAPGRVISAAGSSSVAIPGAPGSPGP
PGPPGSPGLSGPVGPAGHPGQPGPKGDKGDQGEPGIVVKTSETLSSTRAERQDGSAIAAV
PGPPGPPGPPGPPGHPGNSRPGPPGPPGEPGPTGYGRPGPKGEKGDPGNFVPNSGTFFAG
PPGPPGPAGPKGSTGAQGPRGYQGEPGQPGLPGSSSRVISEYGVGQGPPGPPGPPGPPGR
EGRKGDPGAPGSPGFQGDSRGPVGPPGRPGPPGPPGIPGTPGHSSGSHSAADYRRYIMEY
MQSDSMRQQLSSMQGPPGPPGASVSVEDVASRVIAYIQRSGISGGRISQGAQGPPGLPGP
PGSLTVDSIISLLQRDDVRRYVVGPPGPPGTPGSSAGNFNTQEVANYVIRLMNDQGMTGR
TGPPGPPGPPGQPGSSYSDIASLIQRSGLSGGLGRPGPPGPPGIQGPPGPPGSSSSVVSG
YRLEDIQRYLQNSGFRGPPGPPGPQGPPGDTRGLVSYTGSFQRDQIRAELQEYFNSDTIR
RYAHGSPGPPGPPGQKGERGDPGHSYQNIGGQSHYGTEITDPVDYSNVALKVTDYIKNQG
LLEDLTEGYWRGQAGRIQGPPGPPGPPGPPGYSRVMAAYGNVTADLMDFFRTHGTIRGPP
GRPGPKGDRGHPGPKGDKGETGSSGIPGLPGQRGPEGRRGEKGERGDIQTHRSRRSTGV
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctaagagggcacagaaactattcaggaggaagtgcaggagacagagacttc
actgaaacaacaatctccacaagacttacatctttgcctccacgaggcatcattgcttct
tccaacaagggaatgtcaagtaatgcagggcccactagcctggagaagaacattttaact
caaatcaacgacagttctcacatctcatcctcctctgtgggtgtgagcgcagatgggtta
ggctctggatcaagggaatttctggcaaaggagttgtctgtgagtgagggcaggaaggca
gatggtgcctctgcagtttttgagagttcctttggaatcgactcaggttccagggtgaga
tccagctctgagagcatgagaagaacacaagagtcctgcagctcccctttgtttctggag
aggaaaaacatgaccactcaatcaagacgttatgatgggagttcaagtgacaactcatcc
ccagagatgacaagaaaagactatggttcaactagaggaagaagtcagagcagggagaca
gaaatcaggaccagactgcagagtgcatctccctccactagatggacagagttggatgat
gtgaagaagctgttgaagagatcacgctctgccagcatcagccccacacgatctccctct
tcttcccccctgcctgtaccccgcagggccacagtagaggccaagatctccaccaagcca
gtcgagcaatatgacaccactattcttgacacccatctgggctcatacacatggaagagc
tctactctgccctcttcagtgtccactggtactgcttacggtctgcacagcaacacaaac
aacatgtcaacaggaacttctgttgtcaacagcacatcaccatcctccttatcagtcgag
caatatgacaccactattcttgacacccagctgggctcatccgcatggaagagctccact
ctgccctcttcagtgtccactggtactgcttacggtctgcacagcaacacaaacaacatg
tcaacaggaacttctgttgtcaacagcacatcaccatcctccttatcagtgtatggcttc
cataacaatttatctcctgttagtggagttttaacttccagtggagttcacacactctca
ggatacggagtgaagaaaaattattcatcaagtccaagcagcacttttgctgttagtaca
ggcgtatccacttcaggaactggtacaaggctccataatgagaatgtagcaaagagatac
ctgatgctggagaaagagaacattcctgtgaagagagagactgaagaactcattctgacc
aaagacagtggcaaacaatttaccaacagcgcccccaatgggacagctgggtcatactca
gatgcgtcagtgaagaaagaaactgcagtaagctactctgaaagagtccctgtcaagtcc
acctctggcacacaatatgggtctacatcagtgtcaacaaaagataaagctacatatgca
gagattaataaggtgaaggatgatgatgactgtaagtgtggagggggtttttggggctgt
gggcctcagtgctgttcctggtggaagtggctgctggggtttttgctcagcctcctgttg
ctccttggccttctttttggactcattgctctatctgaagaggtcaagaaactaaaggct
cgtgtaggcactctcgagggaatgtcttcctccatgtctgcccacacaagtcgcctgtat
gcttctgtggatgacattaacaaatataatagtggtgcaagtaaactggcatatgaaaat
tcactggggaatgaaaatttggggtctgcagtctattcagataattcagcactacagaga
aatgtacagcaaatcctgagagcagagctgcagtctgaagccatgaaagccttcctagct
ccttcaatcaaaggtgaaagaggattgccaggacctaaaggtgacgctggatctccaggg
cccaagggagacaatggttttccaggattgcagggcccaccaggaatgccaggacatcca
ggaagagaaggatcaaaaggagaaaaaggaagtgcaggtgaacatggtgcagaaggacca
ccagggttcagggggagagatggaccaactgggccccgtggagagccagggcccccagga
gctggagagaagggtgaaaggggtatccctggttttcctggtcctcctggtccggttggt
ccacctgggcttaaaggtgctagtggtttacatggtgaacaaggccctcagggcttcaga
ggtgaatctggccccgctggacttaaaggtgatagaggacttcctggcccacctggaatt
aaaggtgatcatggtgacaaaggagacaatgggttaccaggtgttcctggggctgctggt
cgacaggggcctgctggtgagaaaggagctaaaggatcagcagggcctcaaggagctgat
ggtgaaaaaggccaaagaggtgaaccggggtcaattggtttaccaggaattagaggacca
ccaggaccacccggtgatgctggccaaccaggaactccagggattcagggacctccaggc
attcctggcaatcctggttcacctggggctaaaggtgagactggtgcacctggaagagtg
atcagtgcagcaggctctagctcagtggcaatcccaggagcgcctggaagccctggtcct
cctggcccacctggatctccaggactctcaggtcctgttggccctgctggacatcctggt
caacctggtcctaaaggtgataaaggagatcaaggagaaccgggtattgtagtgaaaact
agcgagaccttgagttcaacgcgagcagaaagacaggatggttctgctattgctgctgtt
cctggacctcccggtcctcctggtcccccagggcctcctggacatccaggaaattctaga
ccaggtccaccaggaccacctggcgaaccaggccccacggggtatggcagaccaggtcca
aaaggagaaaagggagatccaggaaattttgtgcctaattcaggaacattttttgcaggt
ccacctgggccgccaggacctgcagggcctaaaggatcgacaggtgcccagggtccaagg
ggatatcaaggggaaccaggtcagcctggccttccagggagttctagtagagttatctct
gaatatggtgtgggtcaaggtccgcctggccccccagggcctcctggaccacctggacga
gagggccgtaaaggggatcctggagcaccaggttcaccaggatttcaaggagactcaaga
gggccagttgggcctccagggcgacctggtcctccaggccctcctggcattcccggtact
ccagggcattccagtgggtcacattctgctgcggactatcgtcgttacatcatggagtat
atgcaaagtgacagcatgaggcagcagttgtcttccatgcaggggccacctggtccacct
ggagcttcagtgtctgtggaggatgtggcatctcgggtcattgcttacattcagcgctct
ggaatcagtggtggcaggataagtcaaggtgctcaaggcccaccaggtcttcctggccct
cctggaagtctaactgttgactccatcatttcccttttacagagagacgatgtgaggcgt
tatgtggttggtcctccaggaccacctggtacacctggcagtagtgctggtaacttcaac
acacaggaagtggcaaactatgtcatccgattaatgaatgaccaggggatgacaggtaga
actggaccaccaggccctcccggccctcctggccagccaggatcttcctacagtgacata
gccagtctaattcagaggtcagggcttagtggaggcttaggacgtccagggcctcctggt
cctcctgggatacagggaccccctggtcccccagggagcagttcctctgtggtctcaggt
tacagacttgaggacatccagcgctacctgcagaacagtggttttaggggaccccctggc
ccaccaggaccccagggtcctccaggagacactagaggccttgtatcatatactggatct
ttccagcgagaccagattcgtgctgagctgcaggaatacttcaacagtgacactatacga
cgttacgcccatggttcccctgggcctcccgggccccctggtcagaagggtgaacgtggt
gaccctggacacagttatcagaatattggaggccaatcccattatggcactgagattact
gatccagtggactattccaatgttgcactaaaagtgactgactacattaagaaccagggt
ctactggaggatctgacagaggggtattggagaggacaagcaggaagaatccaaggaccc
cctgggcctcctggtcctcctggcccacccgggtacagccgtgtcatggctgcctatggg
aacgtgactgcagacctcatggacttctttagaacacatgggaccattcgagggccacct
ggcaggcccggacccaaaggagatagaggacacccaggaccaaaaggagacaaaggggag
acaggaagttcaggaatacctggcctgccgggacaaagaggacctgagggacgaagagga
gaaaagggcgaaagaggtgatatccagactcatagatcgaggaggagcactggtgtgtaa
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