Myxocyprinus asiaticus (Chinese sucker): 127415213
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Entry
127415213 CDS
T08782
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127415213
04518 Integrin signaling
127415213
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127415213
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127415213
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127415213
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
127415213
NCBI-ProteinID:
XP_051509820
LinkDB
All DBs
Position
24:16715310..16747899
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVASHCVLVSLVRCQQEDDQEVLGGCIQDGQLYADRDVWKPEACRVCV
CDSGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSIGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGERGDKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPPGPNGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPRGPSGPPGKPGSDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGHPGID
GAKGESGAAGAKGEAGSSGENGAPGPMGPRGLPGERGRPGAPGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVTGPKGSTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGATGASGDDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKTGEKGLVGRPGLRGLPGKDGETGPTGPSGPPGVAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGSSGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAVGALGPPGLQGMPGERGASGISGPKGDRGDSGEKGPE
GAPGKDGSRGLTGPIGPPGPSGPNGAKGETGAIGPNGAPGTRGAPGDRGEVGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDSGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGPPGPNGNPGSAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGAPGSPGEK
GEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GTPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGAPGVKGERGNTGPIGAPGSPGAPGAP
GPVGPIGKQGDRGENGPQGPAGPPGAAGARGMVGPQGPRGDKGEAGETGERGLKGHRGFT
GLQGLPGPPGSPGDQGAAGPAGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPARSCRDLQLCHPEWKSGDYWVDPNLGSSADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKTQKHVWFGESMNGGFHFSYSENGQTASTTSIQMN
FLRLLSTEASQTITYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcatcacattgtgttttg
gtatcccttgtcagatgccaacaagaagatgaccaggaagtgttaggcggctgcatccaa
gatggccagctgtacgcagaccgtgacgtatggaagccggaagcgtgccgcgtctgcgtg
tgcgactcgggggcagtgctgtgtgatgaggtcatctgtgaagacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgataccgacgagcct
atcggatcgattggtgcaaagggacagaaaggagaaccaggcgatattgctgatgttgta
ggaccaagaggacccgctggcccaatgggacccccaggagagcagggaccacgtggcgag
agaggagataagggtgagaagggaagtcttggcccaagaggaagagatggtgagcctggt
acacctggtaaccctggaccccctggtccacctggaccaccaggaccaaatggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggcccctctgga
gctcctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgcccttggaccccgtggcccatctgggcctcctggaaaacctggaagtgatggtgag
gctggaaagcctggtaaggctggtgagcgtggacccccaggccctcagggagctcgtgga
tttcctggaacccctggccttcctggcatcaagggacacagaggacacccaggtattgat
ggagctaaaggagagagcggtgctgcaggtgctaagggtgaggcaggttcttccggtgag
aatggtgcccctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctgga
gcacctggttctgctggtgctcgtggtaatgatggtctgccaggtcctgctggtcctcct
ggccctgttggtcctgccggtgctccaggtttcccaggatcccctggttctaagggagaa
gctggtcctactggtgctcgcggacctgagggtgcacaaggaccccgtggagaggctggt
acacctggatcacctgggccctctggtgcttctggtaatcctggtactgatggtattcct
ggagccaaaggatctgctggtgctcctggtattgctggtgccccaggtttcccaggaccc
cgtggcccaccaggacctcagggagctactggacctcttggacctaaaggccaatctgga
gaccccggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgcc
ggacctcagggtgcccctgggccctctggagaggaaggcaagaggggaccaagaggagaa
cctggttctgctgggcctttgggacctcctggagagagaggagctccaggtaaccgtgga
tttcctggtcaggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttcca
ggtgtgactggaccaaaaggatcaactggagatcctggccgcactggggagcctggtctg
cctggagccaggggtctcactggtcgccccggtgatgctggaccccaaggaaaagttgga
gcaactggtgcctctggtgatgatggtcgacctggtcctcctggtcctcagggagctcgt
ggtcagcctggtgtcatgggattccccggtcccaagggagccaatggtgaacctggaaaa
accggagagaaaggacttgttggacgccccggtcttagaggtttgcctgggaaagatgga
gagactggacctactggcccatctggccctcctggtgttgctggtgagagaggagagcag
ggtcagcctggtccttctggcttccagggtctacctggaccaactggtgcccccggagag
cctggtaaaccaggtgaccagggtgttcctggagagggtggtgctgctggtcccactgga
ccgagaggtgaacgtggtttccctggagagagaggaagctctggccctcagggtctccag
ggacccaggggtcttccaggaactcccggaactgatggacccaaaggtgcaattggacca
gcaggtgctgttggagctctgggccctcccggtctgcagggaatgcctggtgagagagga
gcttctggaatctctggacctaaaggtgacagaggtgacagtggagagaaagggcctgaa
ggtgctcctggcaaagatggttcaagaggcttaactggtccaatcggtccacctggtcct
tctggccccaatggcgcaaagggtgaaactggtgcaattggaccaaatggtgctcctggt
actcgtggtgcccctggtgatcgtggtgaggttggtccacctggacctgctggctttgct
ggacctcctggttctgatggccagcctggaattaagggagaacagggtgagtcaggacaa
aagggtgattctggagctcctggaccccaaggaccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaagggagcacgcggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcgggaagagttggaccacctggccccaatggtaaccctggttct
gctggccctgcaggtcctgcaggtaaagatggtcccaagggagttcgtggtgatgctggt
cctccaggaagaccaggagatgctggactgcgtggagctcctggttcccctggagagaag
ggagaggctggagaagatggtcctcctggtcctgatggtccttccggccctgctggactt
gctggacagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccaggt
cttccaggaccctctggtgagcctggcaaacagggagctcctggtggttctggtgaccgt
ggaactcctggccctgttggacctcctggattaactggacctgctggagagcctggacgt
gagggtaatgctggttctgatggtccacctggtagagatggagctcctggtgtgaagggt
gagcgtggtaacactggccctattggggctcctggatctcctggtgcccctggtgctcca
ggtcccgttggcccaattggcaaacagggagacagaggagagaatggtccacaaggacca
gctggaccccctggagctgctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaaactggagaaagaggactgaagggacacagaggattcact
ggtctgcagggtctgcctggacctcctggttctcctggagaccagggtgctgctggacct
gctggaccaagtggagctaaaggaccttctgggcctgttggaccagctggtaaggatgga
tctaatggtcagcctggacccattggaccacccgggcctcgtggacgttctggagagagt
ggcccagctggtccacctggtaaccctggaccccctggtcctcctggtccaccaggccct
ggcattgacatgtctgcctttgctgggttgtctcagcctgagaagggacctgatcctctg
cgttacatgcgtgctgatgaggcctccagctctctcagacaacatgatgtggaagtggat
gctacactgaagtcaatcaacagccagatcgaggacatccgcagccctgatggctcccgg
aagaaccctgcaagatcctgccgagacctgcaactctgccacccagaatggaagagcggt
gactattgggtagatcctaaccttggcagcagtgctgatgccatcaaagtcttctgcaac
atggagactggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggagcagcaagagcaagacacaaaagcatgtgtggttcggagagagcatgaatggtgga
ttccatttcagctactctgaaaatggccagactgctagtactaccagcatccagatgaac
ttcctgagactgctttctactgaggcctcacagaccatcacctaccactgcaagaacagc
gtggcttacatggatcaagccacaggcaacctgaagaaggcccttctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatacggcgtcctggaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccattgtggacattgctcccatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
