Myxocyprinus asiaticus (Chinese sucker): 127421238
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Entry
127421238 CDS
T08782
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03015
mRNA surveillance pathway
masi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127421238
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127421238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masi03021
]
127421238
03019 Messenger RNA biogenesis [BR:
masi03019
]
127421238
Transcription machinery [BR:
masi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127421238
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127421238
U7-dependent histone pre-mRNA processing factors
127421238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
V-ATPase_H_C
Cohesin_HEAT
SCD
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
127421238
NCBI-ProteinID:
XP_051520082
LinkDB
All DBs
Position
3:complement(48872132..48904802)
Genome browser
AA seq
1246 aa
AA seq
DB search
MDERASDFSEMASGMGEQAQVSKEEDAAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQ
ELIINKDPSLLDNFLDELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMR
DESVNVVKKAILTLTQLYKVALQWLVRTKSVSDMQEACWDMVTQMKEDVLALLDSENDGV
RTHAIKFIESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKSALEQL
LKFMVHPAISSINLTAALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRK
NLKLHLVSVLKHPSSVEFQGQVSTLLLDLGMSQSEITRCTPATAPPRKRLNQEPYVEGKR
IKMEAALVEDDEDKEEPAPVTTPKPSSSVGTQSAIDLTAEFLLPLLSPENVANLVLISMV
YLPEVMPASFQATYTPVESAGTDAQIKHLARLMATQMTSAGLGPGLELCKAREEVKEEEG
GAGESSFKDPLIIRKLSAVSLGQAISVVGAYKTPVTEEAPQIKKLPEPILPTTQLKAPGA
SGRKKVFKLADVVQPFSDAHIEKLTNMAIKRILQSEKIIAQSGMSHVRVKLLARLVTQFD
RGKKNDLLQFVLEDMRSRTELAFSLLYHEYNEYLNQQPSGSLDSYEHCLFTLLSGLQEKP
EQRDGLFTKLVLEAPVITDSALEVIRRYCEDESRVYLGISTLKELIQKRPSRQYQYLNVL
LNLSSHEKEKVRTTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGEDTE
VASPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMS
SPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVING
LEKTEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSLTPGELLIALHNIDSSKCD
MKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMN
ILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPAQLASVFERCPEMREPLLQH
VHSFTPHQQAHIPSSIMAVLEANSRKQEPEPQPEPQHQHQEILEEREVHVPRHVSVPVPV
AQVEPPASEPVAFTEPVPQQISPKREEVEEPMEQGEIAHDAQEDISEAASQQMEVPEEET
QSSSVAEKADEPMEESTTSSADVADQPRDVSEDVGTEPEPGESNED
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacgtgcttcagatttttctgagatggcgtcaggcatgggagaacaagcacag
gtctccaaagaggaggacgcagcctttgacatgaccaccagtgagaaggtagtggagctg
ctaaaccaggctgctctcatctccactgaggaaaaacttatcgttctcaaacaggtgcag
gaattgattatcaacaaggacccttcattgctcgataatttcctggatgaactcatcgct
tttcagacagataagtcaattgaggtcagaaagtttgtcatcggattcattgaggaggca
tgtaaaagagacaatgaacttctgctgaggcttattgccaatctgaacatgcttatgagg
gatgagagtgtgaatgtggtgaaaaaggctattctgacgctcactcagctgtataaagtg
gctttacagtggctggtgcgcactaagagtgtctcagacatgcaggaggcatgttgggat
atggtgacccagatgaaagaggatgttttggcattgctggattctgagaatgatggagtc
cgcactcacgccatcaaattcatagagtccctcataatcactctgtcaccacggactccc
gactccgacacgcccaagaagcaggagggagacatcagcctggacaaaatcccaaaagac
cacacatatattcgttatgacaccttgtgtgaggaggggaaatcggctctggagcagctg
ttaaagttcatggtgcaccctgccatctccagcattaatttaactgctgcactgggatca
ctagccactttggcgagacagcgacccatgttcatgtctgaggtggtgcaagcctatgag
acactacatgctaacctgcccccgactctggcgaagtctcaggtgagtagtgtgcgcaag
aacctgaagctacacctggtctctgtgctgaagcaccccagcagtgtggaattccagggc
caggtctctactctgctgctggacctcggcatgtctcagagcgagatcacccgctgcacc
cctgccactgcaccgccccgtaaaagactcaatcaagagccttatgttgagggcaagagg
ataaagatggaggccgctctagtggaggatgatgaagataaggaggaaccagctccagtc
accaccccaaaaccctcctcctccgttggcacccaatcagctatagacctcactgccgag
ttcctgttgcctctactttccccagagaatgtggccaacctggtgctcattagtatggtt
tacctgccagaagtgatgccagcttcattccaggccacctacacgcctgtagaatctgca
ggcactgatgcccagatcaaacatttagcccggcttatggccacacagatgacttcagct
ggcctgggaccagggttggagttgtgtaaggctcgggaagaagtcaaggaggaagaggga
ggagctggcgagtccagctttaaagaccctctcatcatccgcaagctgtctgcagtgtcc
ctcggtcaagccatctcagtggtgggggcctacaagacacctgtcactgaagaggcccct
cagatcaaaaaacttccagagcccatactgcccaccacacagcttaaagctcctggtgcc
agtggtagaaaaaaggtgttcaaactggcagatgtggtgcagcccttttcagatgctcat
atagagaaactgaccaacatggccattaagcgaatcctccaatcagaaaagatcattgca
cagagtggaatgtctcatgtacgtgtgaaactgcttgctcggttggtcactcagtttgac
agggggaagaagaatgatttgttacagtttgtcttggaggacatgcgcagcagaactgaa
ctagccttctctctgttataccacgagtacaatgaatacctgaatcagcagccctcaggc
tctctggatagctatgaacactgtctgttcacacttctctcaggcttgcaggagaaacct
gagcagagagatgggcttttcaccaagcttgtattggaggctccagtcattacagactct
gcactggaggtgattcggcgctactgcgaggatgagtctcgtgtttaccttggcatatcc
actttgaaggagctgatacagaaacgcccatccagacagtaccagtacctcaatgttctt
ttgaacctcagctctcatgaaaaagaaaaggtgcggaccactgccctctccttcatcaaa
cgcatgtatgagaaggaacatctgaaggactgtattgagaagtttgctctcacttacatg
cagtttctggtccacccaaaccctccctctcttctgtttggagcaggagaggatacagag
gtggcgtctccctggacagaggagactgtgcggcagtgcctttacctctatctttccctc
ctgcctctcaaccatcgtctggttcatgagctggctgctgtctatactgaggccatcgct
gatatcaaacgcagtgtactcagggtcatagaacagcctataagaggaatgggaatgagc
tctcctgacctgctgcttttggtggagaactgtcctaaaggagccgagacgctggtcact
cgttgtctgcacatactcactgataaagtgccaccatctcctgagttggtggagagggtg
agggatctttatcataaacgagtgccagatgttcgcttcctcatcccagtgatcaatggc
ctggagaagactgaggtgatccaggctctacccaaactcatcaagctcaatcccatcgtg
gtgaaggaggttttcaaccgactgctgggcactcaacacagtgagggcagttcctccatg
tctctcactcctggggagctcctcattgccttacacaacattgactcctccaagtgtgac
atgaagtcaatcatcaaagccactaacctgtgctttggtgagaagaatgtgtacacatca
gaggtgctggcagtggtgatgcagcagttaatggagcagacccctctccccatactgctc
atgcgtactgtcatacagtctctcaccatgtacccccgactggcaggttttgtcatgaac
atcctggctcgactcatcctcaaacaggtgtggaagtatcctaaggtgtgggagggcttt
gtaaagtgctgccagcgcaccaaacctcagtcatacaacgtgctcctccagctgcctcca
gcccagctggctagtgtgtttgagcgttgcccggagatgagggagcccctcctacaacat
gtgcactccttcacccctcaccaacaagcccacattccttcctccataatggctgtactg
gaggcaaacagcaggaagcaggagccagaaccacaacctgaacctcaacatcaacatcaa
gaaatattggaggagagagaggtgcatgtaccaaggcatgtttcagtaccagtaccagta
gcacaagtagagcctccagcctcggaacccgtagcatttacagaaccagtaccacaacag
atctcacccaagagggaagaagttgaggagcccatggagcagggagaaatagcccatgat
gctcaagaggacatatctgaagcagcatcacagcagatggaggtacctgaggaggaaacc
cagtccagctctgttgcagaaaaggcagacgaacccatggaagagtcgacaactagctct
gctgatgtggctgaccaaccaagagatgtgtctgaggatgttggcacagaaccagagcca
ggagaaagcaatgaggattga
DBGET
integrated database retrieval system
