Myxocyprinus asiaticus (Chinese sucker): 127422779
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Entry
127422779 CDS
T08782
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127422779
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127422779
09142 Cell motility
04820 Cytoskeleton in muscle cells
127422779
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127422779
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127422779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
127422779
NCBI-ProteinID:
XP_051522495
LinkDB
All DBs
Position
32:14009762..14040785
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AA seq
1451 aa
AA seq
DB search
MFSFVDIRLGLLLSAAVLLVRGQGEDDISYGSCSLDGQSYNDKDVWKPEPCQICVCDSGT
IMCDEVICEDTTDCANPEIPDGECCPICPDDGEEFPGPVPPAPEPEVPGLPGPKGDPGPP
GSPGNDGIPGENGLPGPPGPPGIPGLGGGSFLSQMAYGSEKSSGMAVPGSPGPMGPRGPP
GPSGSPGPQGFTGPPGEPGEPGSPGPMGPRGTAGPPGKNGEDGEAGKSGRPGERGPAGPQ
GARGFPGTPGLPGIKGHRGFPGLDGAKGDAGIAGPKGEAGSPGESGTPGAMGPRGLPGER
GRPGSPGPSGARGNDGNTGAAGPPGPTGPAGPPGFPGGAGAKGETGPAGGRGSEGPQGAR
GEPGNPGPAGAAGPAGAPGSDGAPGGKGSPGAAGIAGAPGFPGSRGPAGPPGPGGAPGPK
GNNGDPGLQGPRGEAGPKGEPGPAGPQGLAGPAGEEGKRGARGEPGGAGPVGPPGARGAP
GNRGLPGSDGAPGPLGSNGERGANGPMGAQGATGEAGRPGEPGLPGSRGVTGAPGSPGPD
GKAGPAGAPGQDGRPGPAGPAGSRGPPGVMGFPGPKGTDGEAGKPGDRGVAGPPGALGAP
GKDGDIGAPGAPGPAGPTGEKGEQGSAGSPGFQGLPGAQGATGESGKPGDQGAPGEVGPS
GPSGPRGDRGFPGERGGPGPAGPTGPRGAPGSPGNDGAKGEPGAAGAPGGVGPSGLQGMP
GERGAGGMPGARGDRGDAGPKGPDGAPGKDGLRGMTGPTGPAGPSGAPGEKGEPGGAGPP
GLTGSRGSPGERGEVGAPGPAGFAGPPGANGQPGSKGETGDTGPKGDAGAPGPAGPVGGA
GPQGPAGATGPKGARGGAGPPGATGFPGAAGRVGPPGPSGASGPPGPTGPAGKEGQRGAR
GDKGPAGRPGEAGAAGPPGPAGEKGSVGPDGPAGPAGSPGPPGVIGSRGMVGLSGQRGER
GFPGLPGPSGEPGKQGPSGPVGERGPPGPMGPPGLSGAPGEAGREGNTGHDGAPGRDGPP
GPKGDRGENGNAGPPGAPGAPGAPGPMGPSGKNGDRGEAGSAGAAGPSGPAGVRGPQGPA
GPRGDKGEAGETGERGIKGHRGFSGMAGVPGPPGSPGDQGPAGPSGPAGPRGPPGSNGAA
GKDGMNGIPGPIGPPGPRGRSGEMGAAGAPGLPGPPGPPGPAGIGEPFMPMPQPEKAADP
MRGGYRADDAGVRDRDADVDTSLKSLSQKIENIRSPEGTQANPARMCRDLRMCHSDWKNG
FYWVDPNQGSPLDAIKVYCNMETGETCVHPSQATIPMKNWYTSKNSVKKHVWFGESMPNG
FQFQYGSEGSDPEDVNIQLTFMRLMSNEASQNITYHCKNSVAYMDEATGNLKKALLLQGS
NDIEIRAEGNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDIGAPNQE
FGVEVGPVCFL
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgctgctctctgcagctgtccttttggtg
agaggacaaggagaggatgacatctcatacggtagctgttcgttagacggtcagtcttac
aacgacaaggatgtatggaaacctgagccatgccaaatctgtgtctgcgacagtggaacc
attatgtgcgacgaggtgatctgtgaggatacaaccgactgtgccaatccagagattccc
gacggagaatgctgccccatctgccccgacgatggagaagagttcccaggccctgtgcct
ccagctcctgaacctgaggttcctggcttgcctggaccaaaaggtgacccgggtcctcca
gggtctcctggtaatgatggcattcccggagagaatggactccctggacctcctggtcct
cctggaattcctggccttggtggcggatctttcctctcccagatggcttatggcagtgag
aaatccagcggcatggctgtccccggatcaccaggccccatgggtccccgtggcccccca
ggaccctcaggttcacctggccctcagggattcactggcccccctggcgaacctggtgag
cctggttctcctggtccaatgggtcctcgcggcactgctggtcctcctggaaagaacgga
gaagacggtgaagctggcaaatcaggtcgccccggtgaacgtggacctgctggccctcag
ggtgctcgtgggttccctggaacccctggactccccggcatcaagggacacagaggtttc
cctggtctagatggagctaagggagatgctggcattgctggacctaagggagaggctggt
tccccgggtgagagtggtactcctggagccatgggccctcgtggtctgcctggtgagaga
ggccgccctggttcccctggcccttctggcgctcgtggtaatgatggcaacactggcgct
gctggacctcctggacccactggccctgctggtcctcctggattccctggtggtgctggt
gctaagggagagaccggccctgctggcggccgcggttcagagggacctcaaggagcccgt
ggtgagcctggaaaccctggacctgctggtgccgctggccctgctggtgctcctggatct
gatggtgcccctggtggcaaaggttctcctggtgctgccggtattgctggtgctcctggt
ttccctggttcccgtggaccagctggaccccctggccctggtggtgctcctggcccgaag
ggtaacaacggtgatcctggtctccaaggccctaggggagaagctggtcctaagggagag
cctggcccagctggacctcaaggtcttgctggacctgctggtgaggagggaaagagagga
gctcgtggtgagcctggtggtgctggacctgttggacctcctggagctcgtggggcacct
ggcaatcgcggtcttcctggttctgatggagcacctggtcccttgggttccaatggtgag
cgtggagccaatggaccaatgggagctcaaggagctactggagaggctggccgcccagga
gagccaggtttgcctggatcaaggggtgtgactggtgcccctggaagccctggccctgat
ggcaaagctggacctgctggcgcacctggacaagatggccgccctggacccgcaggacct
gctggatctcgtgggccacctggtgtgatgggattccctggtcccaagggaactgatggt
gaggctggtaagcccggtgatagaggtgttgctggtccccctggtgccttgggtgctcct
ggcaaagatggtgatattggtgctcctggtgccccaggacctgctggacccactggagag
aagggagaacagggatccgctggttcccctggattccagggtcttccaggtgcacagggt
gccactggtgagagtggcaaacctggtgatcagggtgctcctggcgaggttggtccttct
ggtccttctggcccaagaggtgacagaggtttccctggtgaacgtggtggacctggacct
gccggtcctactggtcctcgtggagcccctggttctcctggtaatgatggtgctaaggga
gagcctggtgctgctggagctcctggtggtgttggtccttctggattgcagggaatgccc
ggagagcggggtgctggtggcatgcctggagcaagaggagacagaggagacgctggaccc
aagggccctgatggagctcctggcaaggatggcctgcgtggtatgaccggccctactgga
cctgctggacccagtggtgctcctggtgagaagggagagcctggtggtgctggccctcca
ggactgactggttctcgtggttcccctggtgaacgtggagaggttggtgcccctggacct
gctggattcgctggacctcctggtgccaatggtcagcctggctctaagggagagactggt
gacaccggacccaagggtgatgctggagctccaggacctgctggacccgtcggaggtgct
ggcccacagggacctgctggtgctactggacctaagggtgctcgtggtggtgctggacct
cctggtgccactggtttccctggtgctgctggcagagttggacctccaggtccttctggt
gcttctggaccacctggcccaactggtcctgctggtaaagaaggacaaagaggtgcccgt
ggtgataagggacctgctggtcgccctggagaggctggtgctgctggacccccaggacca
gctggagagaagggtagcgttggtcctgatggccctgctggtcctgctggttctcctggt
ccccctggagttattggatcccgtggtatggttggtctttctggacagagaggagagaga
ggtttccctggactccctggaccttctggagagccaggaaagcagggaccctctggccct
gttggtgagcgtggacctcctggacctatgggcccccctggactgagtggagctcctggt
gaagctgggcgtgagggtaacactggacacgatggtgcacctggtcgtgatggtccacct
ggacccaagggagatcgtggtgagaatggtaatgctggtcctcctggtgctcccggagct
cctggtgcccctggccccatgggtccatctggcaagaatggtgatcgtggagaggctggt
tctgctggtgcggctggtccttctggccccgctggtgtccgtggtcctcagggtcctgct
ggtcctcgtggagacaagggtgaagccggtgagactggagagagaggcatcaagggacac
cggggattctctggaatggctggagttcctggacctcctggatctcctggtgaccaagga
cctgctggaccttctggccccgctggccctcgtggacctcctggctctaatggtgcagct
ggtaaggatggtatgaatggtattcctggacccattggaccccctggacctcgtggtcgc
tctggagaaatgggagctgcaggtgctcctggtcttcctggacctcccggccctcctgga
cctgctggtatcggtgagcccttcatgcccatgccccagcccgagaaggctgcagatcct
atgcgtggaggctacagggctgatgatgctggcgtccgcgaccgtgatgctgacgtggac
acttccctgaaatccctgagccagaagattgagaacatccgcagtcctgaaggaacccag
gccaatcccgctcgcatgtgccgtgacctcaggatgtgtcactctgactggaagaacggt
ttttactgggtggaccccaaccagggctctcctctggatgccatcaaggtctactgcaac
atggagactggtgagacctgtgtccacccatctcaggccaccatacccatgaagaactgg
tacactagcaagaacagtgtgaagaaacatgtttggtttggagagtccatgcctaatggc
ttccagttccagtatggcagtgagggctcagatccagaagatgtcaacatccaactgacc
ttcatgcgcctgatgtccaacgaggcatctcagaacatcacctaccactgcaagaacagc
gtcgcctacatggacgaggccacaggcaacctgaagaaggctctgctcctgcagggctcc
aacgacatcgagatcagagcagagggcaacagccgtttcacatacagagtcagcgaggac
ggctgcacgtcacacactggcacatggggcaagacagtcattgactataagacaacgaaa
acatctcgtctgccaatcattgatatcgctcctatggacattggtgctcccaatcaggaa
ttcggtgtagaagttggcccagtctgcttcttgtaa
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