Myxocyprinus asiaticus (Chinese sucker): 127423953
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Entry
127423953 CDS
T08782
Name
(RefSeq) intermembrane lipid transfer protein VPS13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
masi04131
]
127423953
Membrane trafficking [BR:
masi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
127423953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
127423953
NCBI-ProteinID:
XP_051524630
LinkDB
All DBs
Position
33:complement(11432624..11518866)
Genome browser
AA seq
3227 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEERQLQEAQQRELQRIEE
TKQKAAEKENPKAEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNPNTPLSFGVSLQ
NLSLQTADQNWNPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSNHNPDEALRCLKHSVA
VKNAIPQDHHFIFRPISANAKLRMNPRSDVDFTSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMTRNLPYRKYRPDVPVHTNAPRWWRYVITGVLEVNVKPSLHMWSWQHIRRHRQ
HVKKYRELYKNKITSKKPGEGLLKEFEETEKTLDIFNITMARQQAEMEASKAGLRIYRPG
VKVEEEQSQGWFGWMWNWSGDSYAQTKDVKTGGFDELMTPAEKAKLYAAIGYSETAVNPN
LPKHFENMKIHFQLLSLSLSIKESREKPEIIKLSVIDLKTTLTQRPAAQAIKISAQLSSF
GVSGLPRGKTPPTLVSPNHVGAKDTILLNLMFETNPLDTCVDQILHIDSLPLEIIYDAMT
VNSLSAFFMPPKDLQLDELTNATLMKLEQFRDKTSTGLMYIIETQKVLDLKINLMASYVI
VPENGFYDPKHNLAILDLGHFQMSSQSRAGLPQLSAGSSTIEDIMSRAYDSFDVQLSSLQ
FLYTKAGGDWKRARQLRQSAFHILEPVDLKVVFSRAMVVTDTRMPKFKIYGELPLLSLRI
SDDKVRGVLALLSSIPLPESRPAPQMKAPQVTPKMSKQGNTPQLTPRRPAIDDLRASIIY
GSDEELFFDAPSSPIEDLPFFEASSDSLLSSASEKRLSMVLKDPKKNMTEFLMTFEINKL
SIQLCRLSKGQEVTILHLFIDGLGTQLKLCTFDMSSYTFLREICLECSEYLDSEDKKVHL
ITTLDNTEEDLLTLEYIKADKNAPDFKTAYKNTEQLIKVNFSSLDVHLHTEALLNSINFL
NNLLPPLKKETQEEQPILPKEEEGEEEEAKIEESAVTKKSTSKKSKFEDVLNLHIRADLN
CLKVFIRGEKARISEISIEGLVSEVQMMKKSVEILANLKNIVILDCDKEALYKKAVSIAD
KEVFDFRMVNHVDATEGDAYTDMHIVDTSVTLTVGCIQVIFLNKFVSSILAFVNNFQEAK
NALAEVTAQAAEKAATGVLELAERSTRICLDVNIKAPVVFLPQSSVSHNVIVADLGLVTV
KNHFEIVTSPTHTKIPPVMDIMAVGLSDLKMYRTTFSDGKFKSELQLLKPVNMDLSIKRN
LSASWYHSIPDIQISAHLKPMSLILSQEDLTVVLKTLSENLSETSDALPAPSSSDKGDTV
STKDSQSSGGKTVVTAAVVEGQKTGKLKTTLKLNFQFDSMTLVLYSPSTNEIHLPDSHDE
SLKLAEFTLGTISTAMHMYSDSSMKASVKLTNCLLDDKRQRVKMITSRMMAMRQGREDNV
MVDMSYRQGRDGTVLDTLIQDIYLCASMEFLLTVADVFLKAMADGFSGSPKSNKQPASSF
KETAAPAPPVVAKTEMNVVVKNPEIVFVADLTRAEAPALVMTTQCELTMKSEPNGQTMTA
AVSDLKVVACPFLREKRENNMTTVLQPCQVFFQSSQSASQPQTIELSISSLTLKVSPIII
KTVITIQSALSPAAETPEELESPVPQDLWERRNLKDLKLWFLEEEGEEVTQSITRLIPQG
ESFKINIQSICVTLEAGVGHRTVPMLLAKALFQGDVKNWSTLINLHCHLDIEVNYYNEMM
GLWEPLLEPLDDEAKDGFRPWTLALKMKKKPVLYSGIADEVDGGVPEYKTVISITSKDQL
NITLSKCGLHMLSNLGTAFAEAAKQTTECFQTDQAPFVVKNHLGLAVSVLYSEMFRPIGK
ETKQRVVELLDGESLNMDYTLTAVSTDQFSAMTSLSGKNYIQPTPVGHTSASVIPLIKTG
RGMYSVMHLESGVTRFFVCQIYTVEGSKYVKIRSPFQIINHFSVPLRVFEGSVCLGISLP
TEEFCVPLGSYRAELSLQPVTEGSVEYERSESFSYDEVIQKTGECLEKTCHRHGDSSQMM
KINLVPVPDSVMSHSTEEFDKPFVLHLLPTVLLRNLLPYPITFKLQGNQDSPPTVLKESH
STQIHAAIMNVSTLELKLLGYLQQDWEAQFRLCSDHDEISFIKFHSLPLDEETEAREELD
IAVHVKKEGQTVIAIHSPYWMVNKTRRLLQYKADDIHRKHPKDYDMPLLFSFKPCNFLQN
NKVRLMISESELSDNFSIDTVGHYGLVKCKGKQKDYLVGVKINASSFSLTRLVTFLPFYM
LVNRTKHVIRVCEEGQEHWTESQPGQAAIPFWPERDSKKLRVTVEGCQSSPRAFDFHQPE
NCLLLHLDKTLGGIIVDVNLTEHSVVIRFSDYHDGAAPFLLINHTEETLQFHQSCRNQKG
STWVRDELLDLSLSGGDETDSVGSQAEIDELGPGLAMYYTWTEPTGSRILSWKWGQFKGE
LKSEEDQSDVGKKGQLFVISFYEGLQHVALFTTNQSVYKLICDCEKLQLAQQEISISLQN
MGISLVNNNTSQEVAFIGITSSDVVWETKPKKRSRWKILSGKEAAMLEQHYKDYVDSSPV
DSAIIDLENDYQVLFTANGVDMRMLQPYDAPLRRNFLPALKVEYSVSTRQKAYRIQINRI
QIQNQLPGAIFPFVFYPIKPPKSVRMDSEPKPLADVSIITRAAGHSDILRIKYFMVLIQE
MDLRMDLGFLYAILEIFTAEHTNAVTSEQEVESFAKDIEYLKTELNHVSATDTSPISLYE
YLHISPIKLHLSLSLSTGGEDGNKKERETEIVPVQSLNLLLKSIGATLTDAQDVLFKLGF
FELRYQFRTTQQLQWEVIRHYSKQAIRQMYALVLGLDVIGNPYLLIRGLSEGVEAFFYEP
YQGAIQGPEEFVEGMALGVKALVGGAVGGLAGAASRITGAMAKGVAAMTMDEEYQQKRRE
AMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGALT
RPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQCIE
NGRFAKYRYFAHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGR
RLRIEAKERVKSVFHAKEFGKIINFKTPELAKWVLTKLEDARESLPK
NT seq
9684 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcagtggtggtcgatgtcttaaacaggtttctgggtgactacgtggtg
aacctcgacagctcgcagctcagtctcggcatatggggaggcgatgcaatattgagaaac
cttgaaataaaagaaaatgctttgagtcaactggacattcctttcaaagtcagggcagga
cacataggtcgtttggaattgaaaatcccttggaagaatttgtacacgcagtctgtagag
gccacactggatgaagtctacctgctcatcgtacctactgctagtataaagtatgatgct
gagaaagaagagagacagctacaggaagctcaacagagagagctgcagagaatcgaggag
accaaacagaaagcagcagaaaaagagaatcctaaagcagagaagcaggatacatttgtg
gagaaactggtcactcaggtgattaaaaacctgcaagtgaaaatctccaacatacatgtc
cgctatgaggatgatatcaccaatccaaacactccgctctcatttggagtgtccctacag
aacctcagtctccagacagctgatcagaattggaacccctgtcttctggatgagaaagcc
aagctgttttttaaacttgtacgtctggacaatctgtttgcatactggaatgtgaattca
gaactttactccaaccacaaccccgatgaggccctgcgatgcctgaaacacagtgtagcc
gtcaagaacgcaatccctcaggatcatcatttcatctttcgtccgatatcagcaaatgcc
aagctgcgtatgaatcctcgctctgatgttgatttcacctctccgaaagtggatctagtg
gtcaacctgccagaggtggctgttgaactcagccgaccacagtatgtcagcattctggag
cttttgggctcagtggatatgatgacccgtaaccttccatacaggaagtatcgtccagac
gtgccagttcacactaatgctcctcgatggtggcgatatgtgatcacaggtgttttggag
gtgaatgtcaagcccagccttcacatgtggtcatggcaacacatccgccgccatcggcaa
catgtgaagaagtacagagagctctataagaacaagatcaccagcaagaaacctggagag
gggctgctgaaggaatttgaggagactgaaaaaactctggatattttcaacatcacaatg
gcaagacagcaagctgagatggaggcctcaaaggcggggctacgtatataccgtcctggg
gtgaaggtggaggaagagcagtcacagggctggtttggctggatgtggaactggtctgga
gacagctacgcacaaaccaaagatgtcaaaacaggaggttttgatgaactgatgactcca
gcagagaaagccaaactatatgctgccattggatacagtgagacagccgtcaatcctaac
ctgccaaaacattttgaaaatatgaagatacatttccagctgctcagtctgtctctgtca
atcaaagagagccgagagaagccagagatcatcaaactgtccgtcattgatctgaaaacc
acgttgacacaaagacctgcggctcaggccataaagatctctgctcagctgtcatcgttt
ggagtgtcgggtctccctcggggcaagacgccccctacccttgtgtcaccaaatcacgtg
ggggcaaaggatacaatccttttgaacctgatgtttgagaccaatccactggacacatgt
gtagaccagatactgcacatagattccctgccgctagagatcatctatgatgctatgacg
gtgaacagtttgtcagctttcttcatgcctcctaaagacctgcagctggacgaactgact
aacgccaccctcatgaagctggaacagttcagagacaagacctccacaggcctcatgtac
atcattgagactcaaaaggttcttgatctgaagataaacctcatggcttcatatgtcatc
gtaccagagaacggcttttacgaccccaaacacaaccttgccattctggatttgggccat
tttcagatgtccagtcagagcagagctggactgccacagctgtctgcaggcagcagcact
atagaagacatcatgtctcgagcttacgacagttttgatgtccagctgagcagcttacag
ttcctctacaccaaagcaggtggtgactggaagagggctcgtcaactgaggcagtctgct
tttcacatcctggagcctgtggacctgaaggtggtcttcagcagagccatggtggtcaca
gacacaagaatgcccaagtttaagatttacggtgaacttccgctgctctctctgcggatc
tctgatgataaagtgcgtggtgtgctggcattgctcagcagcattccacttcctgagagt
cgacccgcccctcagatgaaagcaccacaagttacacccaagatgtccaaacaagggaac
acccctcagctcacgccccgaagaccagccatagatgacctgcgtgcatcaatcatatac
ggctcagatgaggagttgttcttcgatgctcccagctcaccgatagaagatttgccgttc
tttgaggcttcatcagactctctgctcagttctgcctctgaaaagcgtctgtccatggtg
ctgaaagaccccaaaaagaatatgactgagttcctcatgacatttgagatcaacaagctt
tccattcagctgtgtcgcctgtcaaaggggcaggaagtgaccattctacatctgtttatt
gatggtttaggaactcaactcaaactctgcacctttgatatgtcctcatacaccttcctt
cgtgagatttgccttgagtgttcagagtacttggattctgaggacaagaaagttcacctt
atcaccactctggacaacactgaggaagatctgcttactttagaatatatcaaggctgac
aaaaatgcgccagattttaaaaccgcgtataaaaacacagagcaactaatcaaggtgaat
ttctcctcactggacgtgcacctgcacactgaggcgctcctcaactcaataaatttcctg
aataacctcctcccacctctgaagaaggagacacaagaggagcagcccatcctaccaaag
gaggaagagggagaggaagaggaggcaaaaatagaggagtctgctgttaccaagaaatcc
accagtaagaagtcaaagtttgaggatgtgttgaatttgcacattagagcagatctgaac
tgtctgaaggtcttcataagaggagagaaagccagaatctctgagatcagcatagaggga
ctggtttctgaagttcagatgatgaagaagtcagtggagattctggctaacctgaagaac
attgtcattctggattgtgacaaagaggctttatacaaaaaggcagtgtccattgcagac
aaggaggtgtttgatttccgcatggtgaatcacgtggatgccacagagggggacgcctac
acggacatgcatattgtggacactagcgtcactctgactgtgggctgtattcaggtcatt
ttcctcaacaagtttgtgtcttcgatactggcgttcgtcaataatttccaggaggctaaa
aatgctttggcagaagtgacagctcaggcagcggagaaagcagccacaggtgtcctggag
ttggcagagagaagcactcgtatctgcctggacgtaaacatcaaagctccagtcgtcttc
cttccacaatcctctgtctctcacaatgtcattgtggcagatctgggtttagtgactgta
aagaaccactttgagatcgtcacctctccaacacatacaaagatccctcctgtgatggac
atcatggctgtgggactgagtgatctgaaaatgtacagaaccacattcagtgatggaaaa
tttaagagtgagcttcaattactcaaaccagtcaatatggacctgtcaatcaaacgcaat
ctctccgcctcctggtatcatagcatccctgatattcagatcagtgctcacctcaaaccc
atgagtctgatcttgagtcaagaggatctgactgtagtgttgaagactctgagtgagaat
ctatcggagacttctgatgctcttccagctccatccagctctgataaaggagacacagtc
tctaccaaagattcacagagctctggaggtaaaactgtagtgaccgctgcagtggtagaa
ggccagaaaacaggcaaactaaagaccactctgaaactaaacttccagtttgactccatg
accctggttctgtacagcccaagtaccaacgagatccatttaccagactcccatgatgag
agtttgaagttggcagagttcacactaggcaccatctccactgcaatgcacatgtactca
gacagctccatgaaagcttccgtcaaactcaccaactgcctgttggatgacaagagacag
agagtcaaaatgatcacatccaggatgatggcaatgcgtcagggcagagaagacaacgtg
atggttgacatgagttatcggcaaggccgagacggcactgttctggacactttgattcag
gacatctatctgtgtgccagcatggagttcctgctaactgtagctgatgtgtttctgaaa
gctatggcagacggcttctcaggttctccaaagagcaacaaacagccagccagttcattt
aaagaaacagcggcccctgctccacctgtggttgctaagactgagatgaacgttgtggtg
aagaatccagagattgtgtttgtggccgacctcacacgagctgaagctccggccctcgtc
atgacgacacagtgtgagctgacgatgaagagcgagcccaacggtcagacgatgacagcg
gccgtttcagatctgaaggtggtggcgtgcccatttctgcgggagaagcgtgaaaataac
atgacgacggtgctgcagccctgtcaggtgttcttccagagcagccaatcagcttctcag
cctcaaaccattgagctctccatcagctccctcacgctcaaggtgtctcccatcatcata
aaaacggtcatcaccattcagtcagcactgagccctgcagccgagacccctgaggagctg
gagagccctgttccacaggatctgtgggaacgtcgcaacctgaaagatctgaaactctgg
ttcctcgaggaggaaggagaggaagtcacccagtccatcactagactgatccctcaagga
gagtctttcaaaatcaacatccaatccatctgcgtgacactagaggccggggtgggccat
cgcacagtgcccatgctgctggctaaagccttgttccaaggagacgtgaagaactggagc
actctcattaacctccactgtcacctggacatagaggtgaattattataatgagatgatg
ggtttatgggagcctcttctggagccgctggacgatgaagcaaaagatggctttagaccc
tggacactggcacttaagatgaagaagaaaccagtattgtattctgggatagctgatgag
gtggacggcggtgtgcctgaatataaaacggtcatcagcatcacaagcaaagaccaactc
aacatcactctctctaagtgtggcctacacatgctcagtaatctaggaacggcgtttgca
gaggccgctaagcagacgacagagtgctttcagacagatcaggctccgtttgtggtaaaa
aaccatttgggtttggccgtgtcggtgctgtacagcgagatgtttagacccatcggtaaa
gagactaaacagcgtgtggtggaactcttggatggagagagtctgaatatggactacacc
ctcacagctgtgtccactgaccagttctctgccatgaccagcctcagtggcaaaaactac
atacagcccactccagttggccacacttccgcaagtgtcatcccactcatcaaaacggga
cggggcatgtacagcgtcatgcacctagagtctggcgtcacacgcttctttgtctgtcaa
atatacactgtcgaggggagcaaatatgtcaagatacgctctcctttccagattatcaat
cacttctcagtgccgttacgagtttttgagggttctgtgtgtctgggcatctctctgcca
acagaagagttctgtgtgccactgggctcctacagagctgaactaagcttgcagcctgta
actgaaggcagtgtagaatacgagcgctcggagagtttctcctatgatgaggtgattcag
aaaactggagagtgtctggagaagacctgccatcgtcacggagacagctctcaaatgatg
aagatcaacttggttcctgttccagactctgtgatgtcacacagcactgaggagtttgac
aagccctttgttttgcacctgttgccgaccgttctcctccgcaacctgctaccgtacccc
atcaccttcaagttacagggcaatcaagattctccccccactgtactaaaagagagccac
tccacccagattcacgcagctatcatgaatgtttccactctggagttgaagctcctggga
tatctgcagcaggactgggaagcccagttccgtctctgcagcgaccatgatgaaatcagc
ttcatcaaattccactcactgccactggatgaggaaacagaggcaagggaggagctagac
attgctgtccatgttaagaaggagggacaaacagtcatagcaatccactcaccctattgg
atggtgaataagacgcgcagactgctccagtataaggcggacgatattcatcgcaaacac
ccgaaagattacgacatgcccctcctcttctctttcaaaccatgcaacttcctgcagaac
aacaaggtccgcttaatgatttcggaaagtgaattatcggacaatttctccattgacact
gttggtcattatggtctagtcaaatgcaaagggaagcaaaaggattatctggtgggggtg
aagatcaatgcatccagcttcagtttgacgcgtctggtgacgttcctgcctttctacatg
ctggtgaacagaaccaaacacgtgatccgagtctgtgaggagggtcaagagcactggaca
gaatcccaacccggacaggctgccattccattctggccagagagagactcaaagaaactt
cgagtgacagtggaaggctgtcaatcatctccacgagcctttgacttccaccaaccagag
aactgcctcttactgcacctggacaaaactctgggtggcattattgtggacgtgaatctc
acagaacattcagttgtgatccggttttctgattatcatgatggtgcggctccgttcctc
ctcatcaaccacacggaggagacgctgcagttccaccagagctgcaggaaccagaaaggg
tctacttgggttcgagatgagttactggatctctctttatcggggggggatgagaccgat
tctgttggctctcaagcagaaatcgatgagctgggtccaggtctggccatgtattacacc
tggaccgagcccactggctcacggatcctaagctggaaatggggccagttcaaaggagag
ctcaagagtgaagaggaccagtcagatgtgggcaagaagggacaactgtttgtcatctca
ttttatgaaggccttcaacatgtagcgctgttcactacaaatcagagtgtttacaagctg
atttgtgattgtgaaaaattgcagctggctcaacaggaaatcagtatctcattacagaac
atgggcatttcactggtcaacaacaacaccagccaagaagtggccttcattggcatcacc
agttctgatgttgtgtgggaaaccaagcctaagaagcgcagccgctggaagattttgagt
ggaaaagaggctgcaatgttggagcagcactataaagattatgtggacagtagtccagtg
gacagcgccatcattgacctagagaacgactaccaggtgttatttactgctaatggggtg
gacatgaggatgttgcagccttatgacgctcctctcagaaggaactttttgcccgcattg
aaggtggagtacagtgtttccacccgacagaaagcttacagaatccaaatcaacaggatt
cagatccaaaatcagttgcctggagcgatcttcccattcgtgttctaccccatcaaacca
cccaagtcagtccgcatggactcagagccgaaaccgcttgctgatgtcagcatcatcacc
agagcagctggacactctgacattcttcgcatcaagtattttatggtgttgattcaggag
atggacctgcggatggatcttgggtttctctacgccatactagagatcttcactgccgag
cacactaatgctgtcacatctgagcaggaggtggagtcgtttgcaaaggacattgagtat
ttgaagaccgaactgaatcatgtgtcagcgactgacacctcccccatcagtctgtacgag
tacctccacatttctcctataaagcttcatctgagtttgtctctgagcactggaggtgaa
gatggaaataagaaagagagagagaccgagatcgtccctgttcagtctctcaacctgctg
ctgaagagtattggagctacactcaccgatgctcaggatgtcctcttcaagcttggcttc
ttcgagctgaggtatcagttccgcaccacccagcagctgcaatgggaggtgatcaggcat
tactccaaacaggctatcaggcagatgtatgcactggtgttgggtttagatgtcattggg
aatccatatttacttattcgcggtctgtccgaaggtgttgaggccttcttttatgagcca
tatcagggtgccatacagggaccagaggagtttgtggaggggatggcactcggtgtgaaa
gctctggttggaggggctgtgggcggtctggcaggtgcagcttctcggatcacaggagcg
atggctaaaggtgtagctgccatgaccatggacgaggagtatcagcagaagagaagagag
gccatgaacaaacagccaagtgggctgagagaagggctgacacggggagggaaaggcctt
gtgtctgggtttgtgagtggcatcacgggtattgtgaccaaacccattaaaggagctcag
aaggaaggagccgcaggtttctttaagggtgtaggaaagggtttggttggggctctgacc
agaccaacagggggcatcattgatatggccagcagcacctttcaaggcattaaaagagct
gcagagacgtctcaggatgtggagagtttgcgtccacctcgcttcattcatgaggacgga
gtcattcggccatataaggagagagagggcattggcagccagatgctacagtgtattgaa
aatggacggtttgccaaatacagatactttgctcatgctaaggtgaatgattcggatttc
ctgatgatcacgaaaaggggaatattttttgtgacaaaaggcacattcgggcagctgacg
tgcgagtggcagtatctttttgacgagtttaccaaagagcccatgattgtggagggcaga
aggttacgaatagaagcaaaggaaagagttaaatctgtgtttcacgccaaagagtttggg
aagatcatcaactttaaaactccagaactagcaaagtgggttcttaccaagcttgaagat
gccagggaaagtttaccgaaataa
DBGET
integrated database retrieval system
