Myxocyprinus asiaticus (Chinese sucker): 127425286
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Entry
127425286 CDS
T08782
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127425286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127425286
03036 Chromosome and associated proteins [BR:
masi03036
]
127425286
Enzymes [BR:
masi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127425286
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127425286
mRNA degradation factors
5'-3' decay
Decapping complex
127425286
Chromosome and associated proteins [BR:
masi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127425286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
TmoB
Motif
Other DBs
NCBI-GeneID:
127425286
NCBI-ProteinID:
XP_051527015
LinkDB
All DBs
Position
34:complement(33964356..33977410)
Genome browser
AA seq
492 aa
AA seq
DB search
MENVSPAVMGMNQHNRQFKGQPKITSQVGPQTAPQGVQPGKEHAGTQKPANASRERTGIR
FGDDWKKSLELPPTDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQAIVVVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIRKGVAKMDKVQIMVMDE
ADKLLSRDFMVLIEDIIGSLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLISAEDRFNMKAIEDQLITDIKPIPGSIDKSLYVAEFHSVNPDCEVEAEEG
ETHRPGREPQAS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgttagccctgctgtcatgggaatgaaccaacacaacaggcagtttaaaggc
cagcctaaaataacctctcaagtaggaccccaaaccgcaccccaaggagttcaacctgga
aaagaacatgcaggaacccagaaaccagccaatgcctctcgagaaagaactggcatcagg
tttggtgatgactggaaaaagagtctagagctcccccctacggacaacagagtcaaaact
tctgatgtcactgccacaaaaggaaatgagtttgaggactactgcttgaagagagagtta
ctgatgggcatctttgagatgggctgggaaaagccctcccccattcaggaggagagtatc
cctattgctctctctggccgtgatatactggctcgtgccaaaaacggaacaggaaagagt
ggtgcgtacttgattcccctactggagagaattgacctgaaaaaggactacattcaggcc
atagtggtagttcccacccgtgagctcgcactgcaggtcagtcagatcagtattcagatt
agtaagcacctgggtggcgttaaagtcatggcaaccacaggtgggaccaacctacgagat
gacatcatgcgcctggatgagacggttcatgttgttatagcaacaccaggccgaattttg
gacttgattagaaagggtgtggccaaaatggataaagttcagataatggttatggatgag
gctgataagttgctctctcgggactttatggttcttattgaggacatcattggttccctt
gcaaagaacagacagattctactttattcggccacctttcccattagcgtacagaagttc
atggtgaagcacctgcagaagccctatgagattaatctgatggaagaattaactctgaag
ggcattacccagtactatgcttacgtcacagagagacagaaagtgcactgtctcaacaca
ctgttttccaggttgcagatcaatcagtccatcatcttctgtaactctactcagagagtg
gaacttttggccaagaagatcacccagctgggctactcctgcttttacattcatgcaaaa
atgatgcaggaatatagaaaccgtgttttccatgacttcagaaatggactctgcagaaat
cttgtctgcacagatttgttcactagaggcattgacatccaggcagtaaatgtggtcata
aactttgacttccccaagaatgcagagacctatctgcatcgcataggacgctcaggaaga
tttggacatttgggtttggctatcaatctcatttccgctgaggaccgctttaacatgaag
gccatcgaggaccagctgatcacggacatcaaacccattcccggcagcattgataagagc
ctgtatgtggcagagttccactctgttaaccctgactgtgaggtggaagcagaggaggga
gagacccatcgccctggcagagagcctcaagcctcttaa
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