Myxocyprinus asiaticus (Chinese sucker): 127427372
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Entry
127427372 CDS
T08782
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127427372
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127427372
09142 Cell motility
04820 Cytoskeleton in muscle cells
127427372
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127427372
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127427372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
127427372
NCBI-ProteinID:
XP_051530903
LinkDB
All DBs
Position
36:complement(30091676..30125320)
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AA seq
1451 aa
AA seq
DB search
MFSFVDIRLGLLLSAAVLVVRGQGEDDISFGSCSLDGQSYNDKDVWKPEPCQICVCDSGT
IMCDEVICEDTSDCADPEIPDGECCPICPDDGVEIPGTLPPVPGPEQPGYPGPKGDPGPP
GPPGRDGIPGENGLPGPPGPPGTPGLGGGSFLSQMAYGSEKSSGPSVPGPPGPMGPRGPP
GPSGSHGPQGFPGPPGEPGEPGAPGPMGPRGTAGPPGKNGEDGEAGKPGRPGERGAAGSQ
GARGFPGTPGLPGIKGHRGFPGLDGAKGDAGIAGPKGEAGSPGESGTPGAMGPRGLPGER
GRPGPPGPAGARGNDGNTGAAGPPGSTGPAGPPGFPGGAGAKGETGPAGGRGSEGPQGAR
GEPGNPGPAGAAGPAGAPGADGGPGAKGSPGAAGISGAPGFPGARGPAGPPGPGGAPGPK
GNNGDPGLQGPRGEAGPKGEPGPAGPQGLAGPAGEEGKRGARGEPGGAGPVGPPGARGAP
GNRGLPGADGGPGTLGAPGERGANGPMGAQGATGESGRPGEPGLPGSRGVTGAPGSPGPD
GKAGPAGAPGQDGRPGPPGPAGSRGPPGVMGFPGSKGADGEPGKPGDRGVAGAPGALGAP
GKDGDVGAPGASGPAGPAGEKGEQGPAGSPGFQGLPGAQGATGESGKPGEQGVPGEVGPS
GPSGPRGDRGFPGERGGPGPAGPSGPRGAPGSPGNDGAKGEPGAAGAPGGVGPSGLQGMP
GERGAGGMPGARGDRGDAGPKGPDGAPGKDGLRGMTGPTGPSGPSGAAGEKGEPGAAGPP
GLTGPRGSPGERGEVGAPGPAGFAGPPGANGQPGSKGETGDTGPKGDAGAPGPAGPVGAA
GPQGPAGATGAKGARGGAGPPGAAGFPGAAGRVGPPGPSGASGPPGPPGPAGKEGQRGSR
GDKGPAGRPGEAGAAGPPGPAGEKGSTGPDGPAGPAGAPGPPGVIGSRGIVGLSGQRGER
GFPGLPGPSGEPGKQGPSGPVGERGPPGPMGPPGLSGAPGEAGREGSTGHDGAPGRDGPP
GPKGDRGESGNAGPPGAPGAPGAPGPMGPSGKNGDRGEAGHAGAAGPSGPAGARGPQGPA
GPRGDKGEAGETGERGIKGHRGFSGMAGVPGPPGPPGDQGPAGPSGPAGPRGPAGSNGAA
GKDGMNGIPGPIGPPGPRGRSGEMGPAGAPGLPGPPGPPGPAGIGEPFMAMPQPEKAADP
LRGGYRADDASVHDRDADVDTSLKSLSQKIENIRSPEGTQANPVRMCRDLRMCHPDWKSG
SYWVDPNQGSPLDAVKVYCNMETGETCVGPSQATIPMKNWYTSKNSVKKHVWFGESMPNG
FQFQYGSEGSDPEDINIQLTFMRLMSNEASQNITYHCKNSVAYMDEATGNLKKALLLQGS
NDIEIRPEGNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDIGAPDQE
FGVEVGPVCFL
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggttgctgctctccgcagcggtccttgtggtg
agaggacagggagaggatgatatctctttcggtagctgttcgttggacggtcagtcttac
aatgacaaggacgtatggaaacctgagccctgccaaatctgcgtctgcgacagcggaacc
atcatgtgcgatgaggtgatctgcgaggatacatcagactgtgccgatccagagattccc
gacggagaatgctgccccatctgccccgacgatggagtggagattccaggcactttgcct
ccagttcctggtcctgagcagcctggctatcctgggccaaaaggtgacccgggccctcca
gggcctcctggtagggatggcattcccggagagaacggactccctggacctcctggtcct
cctggaacccctggccttggtggtggatctttcctctcccagatggcttatggtagtgag
aaatccagcggcccttctgtccccggaccaccaggccccatgggtccccgtggcccccca
ggaccctcaggttcacatggccctcagggattccctggccccccaggtgaacctggtgag
cctggtgctcctggtccaatgggtcctcgcggtactgctggtcctcctggaaagaacgga
gaagatggtgaagctggcaaaccaggtcgccctggtgagcgtggagctgctgggtctcag
ggtgctcgtgggttccctggaacccctggactccccggcatcaagggacacagaggtttc
cctggtctagatggagctaagggagatgctggcattgctggacctaagggagaggctggc
tcccccggtgagagtggtacccctggagccatgggtcctcgtggtctgcccggtgagaga
ggccgccctggtccccctggccctgctggtgctcgtggtaatgatggcaacactggtgct
gctggacctcccggatccactggccctgctggtcctcctggattccctggtggtgctggt
gctaagggagagacaggccctgctggaggccgcggttcagagggacctcagggagcccgt
ggtgagcctggcaaccctggacctgctggtgctgctggtcctgctggtgctcctggagct
gatggtggccctggtgccaaaggttcccctggtgctgctggtatttctggtgctcctggt
ttccctggtgcccgtggaccagctggaccccctggccctggtggtgctcctggcccgaag
ggtaacaacggtgaccctggtctccaaggacctaggggagaagctggtcctaaaggagag
cctggcccagctggacctcaaggtcttgctggacctgctggtgaggagggaaagagagga
gctcgtggtgagcctggtggtgctggacctgttggacctcctggagctcgtggtgcccct
ggcaatcgtggtctccctggtgctgatggaggacctggcaccctgggcgcccctggtgag
cgtggagccaatggaccaatgggagctcaaggagctaccggagagtctggccgcccagga
gagccaggtttgcctggatcaaggggtgtgactggtgccccaggtagccctggacctgat
ggcaaagctggacctgctggtgcacctggacaagatggtcgccctggacccccaggacct
gctgggtctcgtggtccacctggtgtgatgggattccctggctccaagggagctgatggt
gagcctggtaagcccggtgatagaggtgttgctggtgcccctggtgccttgggtgctcct
ggcaaagatggtgatgttggtgctcctggtgcttctggacctgctggaccagctggagag
aagggagaacagggacccgctggttcccccggattccagggtcttccaggtgcacagggt
gccacaggtgagagtggcaaacctggtgagcagggtgttcctggcgaagttggtccttct
ggtccttctggcccaagaggtgacagaggtttccctggtgagcgtggtggtcctggacct
gccggtccttctggtcctcgtggagcccctggtagtcccggtaatgatggtgctaaggga
gagcctggtgctgctggagcccctggtggtgttggtccttctggattacagggaatgccc
ggagaacgcggtgctggtggcatgcctggagcaagaggagacagaggagatgctggaccc
aagggccctgatggtgctcctggcaaggatggcttgcgtgggatgaccggcccaactgga
ccttctggacccagtggtgctgctggtgagaagggagagcccggtgctgctggccctcca
ggactgactggccctcgtggttcccctggtgagcgtggcgaggttggtgcccctggacct
gctgggttcgctggacctcctggtgccaatggtcagcccggttctaagggagagactggt
gacaccggacccaagggtgatgctggagccccaggacctgctggacctgtcggagctgct
ggcccacagggacctgctggtgctactggagctaaaggtgctcgtggtggtgctggacct
cctggtgccgctggtttccctggtgctgctggccgagtcggacctccaggtccttctggt
gcttctggaccccctggcccacctggccctgctggtaaagaaggacaaagaggttcccgt
ggtgataagggacctgctggtcgccctggagaggctggtgctgctggacccccaggacct
gctggagagaagggtagcactggtcctgacggtcctgctggtcctgctggtgctcctggt
ccacctggtgttattggatcccgtggtattgttggtctttctggacagagaggagagaga
ggtttccctggtctccctggaccttctggagagccaggaaagcagggaccctctggcccc
gttggtgagcgtggacctcctggacctatgggcccccctggactgagtggagctcctggt
gaagccggacgtgagggtagcactggacatgatggtgctccgggtcgtgacgggccacct
ggacccaagggagatcgtggtgagagtggtaatgctggtcctcctggtgctcccggtgct
cctggtgcccctggccccatgggtccatctggcaagaatggtgatcgtggagaggctggt
catgctggtgctgctggtccttcaggccccgctggtgcccgtggtcctcagggtcctgct
ggtccacgtggagacaagggtgaagccggtgagactggagagagaggcatcaagggacac
cgtggattctctggaatggctggagttcctggacctcctggacctcctggtgatcaagga
cctgctggaccttctggccccgctggccctcgtggacctgctggctctaatggtgccgct
ggtaaggatggtatgaatggtatacctggacccattggaccccctggaccccgtggtcgc
tctggagaaatgggacctgctggagctcctggtcttcctggacctcctggccctcctgga
cctgctggcatcggtgagcccttcatggccatgccccagcccgagaaggctgcagatcct
ctgcgcggaggctacagggctgatgatgctagcgtccacgaccgtgatgctgacgtggac
acttccctgaaatccctgagccagaagattgaaaacatccgcagccctgaaggaacccag
gccaaccccgttcgcatgtgtcgtgacctcaggatgtgccaccctgactggaagagcggt
tcttactgggtggatcccaaccagggctctcctctggatgccgtcaaagtctactgcaac
atggagactggtgagacctgcgtcggcccatctcaggccaccatacccatgaagaattgg
tacactagcaagaacagtgtgaagaaacacgtctggtttggagagtccatgcctaatggc
ttccagttccagtatggcagtgagggctcagatccagaagatatcaacatccaactgacc
ttcatgcgcctgatgtccaacgaggcatctcagaacatcacctaccactgcaagaacagt
gtcgcctacatggatgaggccacaggaaacctgaagaaggctctgctcctgcagggctcc
aatgacatcgagatcagaccggagggcaacagccgctttacatacagagtcagcgaggat
ggctgcacgtcacacactggcacatggggcaagacagtcattgactataagacaacgaaa
acatctcgtctgccaatcattgatatcgctcctatggacattggtgctcccgatcaggaa
ttcggcgtagaagttggcccagtctgcttcttgtaa
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integrated database retrieval system
