Myxocyprinus asiaticus (Chinese sucker): 127427506
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Entry
127427506 CDS
T08782
Name
(RefSeq) transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127427506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
masi03000
]
127427506
Transcription factors [BR:
masi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127427506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sox17_18_mid
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127427506
NCBI-ProteinID:
XP_051531142
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Position
1:complement(64615215..64621740)
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AA seq
419 aa
AA seq
DB search
MSSPDAGYASDDPSQTRGTSSVMMPGVSQCAWADPLSPLADSKLKSETCPAAVGPRRGKS
EPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKQWKALPMVDKRPFVEEAERL
RVKHMQDHPNYKYRPRRRKQVKRNKRLDPGFLLPGADTQIPLGMDGMGYSGLPQAGLPPY
CETQGLFEPYSLPTPDPSSMDAGATEFFTHLQDEHHQSAYSYHHHQEYQLQEHTHTNTHP
QVSTRSQCIPHSNVNMHTQHTNPSNTQLNLTNNAQQLSNVSANPQTGQNTCTHPNSVSLA
LFNRNLSPPSHQTTAYLSCPSSTGVFYGANSQLKHSYEELSLPVAGRTHTHNPADPHTQA
PVATQSRGPGEMVDEVDSSEFEQYLSYGVPHVPLQGPDLISSVLSDASTAVYYCGYNNS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggctacgccagtgacgacccgagccagacccgcggcaccagc
tcagtcatgatgcccggcgtgagccagtgcgcgtgggcggacccgctcagcccgcttgct
gactccaaactgaagagcgagacgtgtcctgctgctgtgggtcccaggcgcggcaaaagc
gagccgcgcatccgacggccgatgaacgcattcatggtgtgggcaaaagatgagcgcaag
aggttggcgcagcaaaaccccgacctgcacaacgcggagctcagtaaaatgctcggtaag
caatggaaagctttaccaatggtggacaaacgtccattcgtggaggaggctgaacgtctg
cgagtgaaacacatgcaggaccacccaaactacaagtaccggccacggcgtcgcaaacag
gtgaaacgaaacaaacgactggaccctggcttcctgctgcctggggcagacacgcagatc
cctttggggatggacggtatgggttattctggactgccgcaagccggactgcctccgtac
tgtgagacccagggtttgtttgaaccctacagtttgcctacacccgacccctcttcgatg
gatgccggagcgaccgaattcttcacccatctccaagacgaacaccatcagtcagcatac
agctatcatcatcaccaagagtaccagcttcaggaacacacacacaccaacacgcaccct
caagtgagcactcgttctcaatgcatccctcactccaacgtcaacatgcacacgcagcac
accaatcccagcaatacacaactaaatctgacgaacaacgcacaacaactgagtaatgtg
agcgccaacccgcagactggtcagaatacttgtactcatcctaactcggtctctctcgcc
ctcttcaacagaaatctttcccctccttctcatcaaaccaccgcgtacttgagctgccct
tccagtacaggtgtcttttatggtgccaactctcaattgaagcattcttatgaggaactg
tcacttcctgtcgccggtcgcacgcatacacacaaccctgctgatccgcatactcaggct
cctgtggcaacacagagtcgaggtcctggagaaatggtggatgaggtggacagcagtgag
tttgagcaatacctctcatatggggtcccacatgtacccttacaagggcccgacctaatc
tcatctgtactgtctgatgccagcactgccgtctactactgtggctacaataattcctga
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