Myxocyprinus asiaticus (Chinese sucker): 127428665
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Entry
127428665 CDS
T08782
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127428665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masi03021
]
127428665
03019 Messenger RNA biogenesis [BR:
masi03019
]
127428665
Transcription machinery [BR:
masi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127428665
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127428665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
127428665
NCBI-ProteinID:
XP_051533128
LinkDB
All DBs
Position
38:18358903..18374993
Genome browser
AA seq
1488 aa
AA seq
DB search
MSDEGAREDACREYESSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAA
EKLPVLYLVDSIVKNVGRQYLEVFAKNLVNSFICVFEKVDEGTRKSLFKLRSTWDEIFPL
KKLYALDVRVNSVDPAWPIKPLPPNVNASIHVNPKFLKPTEEVTSPKPATLQPPSHPTLS
EKSLTQEQIIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPVLATNHHINVPVHFEV
SPKVTQTVPATQTKPWPQAPSEKFSTRDPRIKRFGTTAVNTKEQVIQKKESQIASGFLNT
SEKKEQALAERQSKLDKIRIPKKDTSAIDERVKSKSVSPSGKGLLVRPRGMETEHTRTAE
FNKKDPRLHKQKNDKTDLKEEDVREKKRSSEKKDRDDTAKSMDHQKSSITRGKLINGSLN
KHERLETFLKQENKVNREKFRKRSRSKSRSPPVHSPKRKDRRLSPKRKMRSITPPPKSGK
ARQLNKHPHNEDALPQTNLRDERSTTKKSAPEPRRSKRPLEDRPADQKDGPQQRIPPAEH
KDTKDGKRWKSGWEENKRPKQSERDISHGRLGTQGHKTWNTQRPTTPRTPKIHRLSIDAN
LQIPEALNSASKRDLLRKASERHADGEISNEEFLSVAHQIKQLFQYQEERQRSDSWDESC
DEGMYSSKKKSQETISLAELSYLEHKSKLRRTQLQRSVHKEGQLPFHDDLTYQHPHEKSE
QHSESSDVHKKPSDAIKSVLGHDDPRRTNRTPSCTGSTFRNSPSPISLDGPAGKVLPFEQ
ASSPAEFEMDQLPEGDISPRFESPNSVHSGTGTDDGPISLESLQRHEPFLEQGRSGRNLG
ESPGQTPTHSSEEPNVKANMPRHDGLNISQRFDRYKSSQSPYDGAPSHMREPRLDGPPRI
DGPPRLDGPPRPYPTPRFEGNTGGYDGSGGHGPMRFPGHRYDAPHVPRFERPFLKTLERP
VRYNNPQVPSRPMRYVEPHNMVRFEPQAPIHYDQPRHQNRYVCPPRFDNPHIPQGPPRYN
EPRFQSRLINYDEQQGTVRFDNPSGGMRFENPVQPESIRFDAQPVMPRYDPQAPPRFCGP
NIQHQLRPQEPTMYDPSQAPVINPGVPPPNFNMTPMNSFGSPAQPFPMQPNVPQAPNCGV
PVPTSSEFQNSYRPPPFPGPGVGNVPPMIGTQPFMPQNQLPFQPGSQFPQPDPESLSQID
VNDLVSKLISTGIIKPSQTDSTTDSTVSIQSVSVPEEEEEEEQEEDENVPDLTGFVLDDM
KQRYDSVVIKLYTGIQCYSCGVRFTASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYY
SLMDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREFQSVKAAADVVHELCEIC
QEQFEMYWEEEEEEWHLKNAIRVDEKTYHPSCYEDYKNTSSFVECTPSPSKMLTENPLVD
FIKQEQGDEASCSSIKEEPSEDDADAPMVKEEVQVKLDEESQTSAIIF
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgtcgcgagtatgagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaatatgcttaccattctagccgaagagaacatc
caattcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctgct
gagaagctccccgttttatacttagtggattccatagtgaagaatgttggacgacaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtttttgagaaggtggat
gagggcactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaagctgtatgcactagatgtgcgtgtgaactctgtagatcctgcttggcctattaaa
cctttgccaccaaatgtgaatgccagcattcatgtaaaccccaaatttttaaagccgact
gaagaagtaacatctcccaagcccgctacactacaacctcctagtcatcccactctcagt
gagaagagcttgacacaagaacaaataattaggcaacagttgcttgcaaagcagaaacag
ttgctagagcttcagcaaaagaagattgagcttgaacttgagcaaacaaaagcccagttg
gctgcaagtcctgttttggctacaaaccaccatatcaatgttccagtccattttgaagtg
tcaccaaaggtcacccaaactgttcctgcaacacaaaccaaaccttggcctcaagcacca
tcagaaaaattttcaacaagggatcctagaataaaacgatttggtacaacagctgtaaat
acaaaggaacaagtgatacaaaagaaagagagccagattgcatcaggttttctgaataca
tctgaaaaaaaagagcaagccttagcagaaagacagagtaagttggacaagattaggatt
ccaaaaaaagatacctctgccattgacgaaagggttaaatccaagtctgtttcaccatct
ggcaaaggtctcctagtcagacccagagggatggagactgaacatacaagaacagctgaa
tttaataagaaggacccaaggttacataagcagaaaaatgacaagaccgatttaaaagag
gaagatgtcagagagaagaagagaagttctgagaaaaaagatagggatgatacggccaaa
agcatggatcaccagaaatccagcatcaccagaggcaagcttataaatggctctttaaat
aaacatgaaagacttgaaacatttctgaaacaagaaaataaagtaaacagagaaaagttt
agaaaaaggtctcgctcaaaatcccgttcaccaccagtacattctccaaagagaaaagac
aggcgattatctccaaagagaaaaatgaggagtattactccacctcccaagtctggaaag
gctagacagttaaacaaacatccacataatgaagatgctcttccacaaacaaatttaaga
gatgaacgaagtactactaagaaaagtgctccagaaccaaggcggtcaaaaaggccactc
gaggatagacctgcagatcagaaggatggaccacaacagagaatccctcctgccgagcac
aaagacacaaaagatggcaagaggtggaagagtggatgggaggaaaataaacgtcccaaa
cagtcagagcgagatatctcacatggaagactgggtacccaggggcacaagacatggaac
acccagagacccaccacacctcgtacacctaaaatacatcggctgagcattgatgccaac
ctacaaataccagaagcactcaattctgcaagtaaaagggatcttctgagaaaggcaagc
gaaaggcatgctgatggtgagatatccaatgaagaattcctcagtgtagcccatcaaata
aagcaactttttcagtatcaggaggaaagacaacgctctgactcttgggatgaatcatgt
gacgaagggatgtactcatcaaaaaagaaatcacaagaaacaataagtcttgctgagctt
tcttatcttgaacataaatccaagttaagaagaacacaactccagcgttcagtgcacaaa
gagggccaattgccttttcatgatgacctgacttatcaacatcctcatgaaaagagtgaa
caacacagtgagagctcagatgtgcacaaaaagcctagtgatgccataaaatcagtcttg
ggccatgatgatcctagaagaaccaataggaccccatcgtgtacaggttccactttcaga
aattcaccaagccccatcagcttggatgggccagctggaaaagtactgccatttgagcag
gcatcatcacctgctgaatttgaaatggatcaacttcccgaaggagacatcagtccacgt
tttgaaagtcccaacagtgtgcactctggcacaggcacagatgatggtccaataagttta
gaaagtcttcaaaggcatgaacctttcttggaacagggacgaagcggacgaaaccttggt
gaatcccctgggcaaacaccaactcactcttctgaagaaccaaatgtgaaggcaaatatg
ccacggcatgatggactgaatatttctcagcgatttgatagatataagagttctcagtct
ccttatgatggggcacctagtcatatgagggagccacggttagacggtcctccaagaata
gatggtccacctaggttagacggtccaccaagaccttatcctactcctcgatttgaaggc
aatacaggtggatatgatgggtcgggtggtcatggacccatgaggttccctggacatcga
tatgatgcccctcatgtaccccgctttgaaagaccatttcttaaaacccttgaaagacct
gtgagatataataacccacaagtaccatctaggccaatgagatatgtagagcctcataat
atggtaagatttgagcctcaagccccaattcattatgatcaacccaggcatcaaaacaga
tatgtttgtccaccaaggtttgataatcctcacataccacagggtccgcccagatataat
gagccaaggttccagtctagactaattaattatgatgaacagcaaggtacagttagattt
gacaatccatcaggtgggatgcggtttgagaacccagtgcagccagaatccataagattt
gatgcccaaccagtcatgccaagatatgacccacaagctcccccaagattctgcggtcca
aatatccaacatcagctgagaccacaagagccgacaatgtacgatccatctcaagctcct
gtaataaaccctggtgtgccaccacccaatttcaatatgacacctatgaactcgtttggc
agcccagcccaaccttttcctatgcagccaaatgttccacaagcaccaaactgtggcgtg
ccagtacctacatcatcagaattccagaattcttatagacctcctccattcccaggtcca
ggtgttggaaatgttccacctatgattggaactcagcccttcatgccacaaaaccaattg
cctttccagccaggttcccagtttccacagcctgatcctgagtcacttagtcagatagat
gtgaatgatctagtatcaaagcttatatccactggaataataaaaccttcacaaacagac
tcaacaactgattccacagtatcaattcagtctgtatctgtccctgaggaagaggaagag
gaggaacaagaagaagatgaaaatgtcccagatttgactggttttgttttggatgacatg
aaacagagatacgacagtgttgtcatcaaactgtatactggaatccagtgctattcctgt
ggcgtgcgttttactgcatctcagacggatgtgtatgctgatcatttggactggcactac
agacagaatcgttctgagaaggacattagtaagaaagttacacatcggaggtggtactat
agcctgatggattggattgaattcgaggaaattgctgatcttgaggagagggcaaagagt
cagttctttgaaaaagttcatgaggaggttgtacagaaaactcaggaagcagccaaagag
agagagttccaaagtgtgaaggctgctgcagatgttgttcatgagttatgtgagatttgc
caggagcagtttgagatgtattgggaagaggaagaggaggagtggcacctgaagaatgcc
atccgagttgatgaaaagacataccatccatcgtgttatgaagactacaaaaatacatcc
tcctttgtggaatgcacaccttcacccagtaaaatgcttacagaaaaccctttagtggat
ttcatcaaacaagagcagggtgatgaggcctcatgctccagtattaaagaagaaccctct
gaggacgatgcggatgcaccaatggtaaaagaggaggttcaggttaagttagatgaagaa
tcacaaaccagtgcaattattttctaa
DBGET
integrated database retrieval system
