Myxocyprinus asiaticus (Chinese sucker): 127430322
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Entry
127430322 CDS
T08782
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04382
Cornified envelope formation
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04518
Integrin signaling
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127430322
04518 Integrin signaling
127430322
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127430322
09142 Cell motility
04820 Cytoskeleton in muscle cells
127430322
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127430322
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
masi04147
]
127430322
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127430322
Exosome [BR:
masi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127430322
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127430322
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127430322
NCBI-ProteinID:
XP_051536008
LinkDB
All DBs
Position
39:complement(8283266..8356295)
Genome browser
AA seq
1658 aa
AA seq
DB search
MDRGVLSRAIFVMLLLGLLTPARTDGGCVCSGKSQCDCHGIKGDMGEPGLPGFDGAPGKP
GHQGNEGPSGYPGPKGNMGIPGIPGPKGSRGTPGTPGFLGPPGLPGFPGKEGPRGSPGLP
GCNGTEGEPGAPGLIGMMGRPGLQGFPGIQGPKGDTYYFPPSDAVKGRCGLPGRKGEKGL
PGLPGLMGPVGPEGPRGATGIQGFPGMQGEKGLEGRSMGILGPRGQKGEKGPPGIPGQKG
VKLFVTGPKEPKGDQGDPGDIGCPGPIGRPGRPGPKGEKGERGEPGGPGKAGKDGLQGES
GPKGEPGDVGFQGATGIAGEMGAKGDRGPPGLPGEFIVIDREVKGQKGFPGPPGPPGLRG
SEGFSGFPGNPGPPGLAIPGPKGPPGPPGFRGEKGETGEPAPYITGTKGIDGLPGERGPP
GDPGPPGTPNVNRRVGLQGPKGEKGLTGPKGLCGDPGKPGEQGDLCRLCAVSGGEPGPPG
PPGDPGTPGEPGVRGFQGIKGSQGFQGPEGPPGPPGSLGPPGFPGPPGSKGDLGKISEIG
EKGQTGNSGFPGPSGTNGNDGIPGNPGFKGPPGPKGNPGSPGPKGNHGDQGPSGEPGRTG
PMGSQGSMGVGQPGIPGEKGSLGVVGRQGNPGEPGEKGSPGSVQMTPGDPGEPGRPGPPG
LPGPPGNEGCAGVQGFPGPYGVKGEKGLSIQGGPGLTGPKGDKGVKGRPGLPGFGSAGRP
GPPGPPGLPGSKGDMAFGFPGPKGRQGLPGDEGALGSPGNYGPPGLPGCPGQRGRDGPPG
DCGARGLDGSPGDAGVPGCCIPGAKGDEGPLGTRGLDGPSGMQGLKGSRGETGPSGQGVP
GQTGMAGMPGKNGAAGLIGIQGPKGFRGRDGSPGYPGPRGNQGDPGSMGPPGAEGNPGPP
GAPGPKGLMGRNGVPGDKGKPGEPGDRGAFGPKGQPTNFMSPGDPGELGLPGLLGLTGSK
GEPGIPGNYGESGKNGLPGSTGPPGPPGDPGQKGLPGNRGLDGNFGYPGVIGFPGVKGDK
GLPGVRGEAGTPGVPGQNGPKGIKGEPSQPWPGLPGPPGEKGEPGHPGSKGEKGDKGIFG
IAGPPGLTGFPGVRGETGVPGGPGPPGPPGDKGLDGLPGPTGYQGPCGPPGVPGSAGDPG
PSGSRGDQGRDGIPGPSGTKGDRGLTVNGTPGPLGIKGEKGTKGNPGPQGPCGPPGPYGP
EGEKGLPGLLGKPGPRGCPGPAGICVDGPKGERGPYGPPGLQGLQGPRGPPGDPGPGLKG
NKGETGPQGLRGGPGCTGHSGVPGGPGSDGGPGCKGPKGDMGPMGDVGPIGPKGSCGPSG
PPGLKGYKGSPGPKGPKGCDAVGEVILSPGDPGLPGDAGEKGEQGDPGPPGLTGPRGTQG
RKGATGLDGGPGRPGIPGPKGDSGPPGRHGARGLSGEEGPKGSVGPKGAFMQNGTRDSFL
FTRHSQRSDVPTCPSESRHLYFGYSLLFIIGNNRGHGQDLGTLGSCLPRFSTMPFLVCNP
DETCRYASRSDYSYWLSSDIPLSSNKALISGDLLEQYISRCAVCEAPANVIAVHSQTNQI
PQCPAGWLSLWQGYSFVMQTAAGAEGSGQPLVSPGSCLEEFRKIPFIECHGRGTCNLYDD
SYSYWLASLDPERMFSMPVRQTARQQDIISRCRVCMKQ
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcggtgtactatcgcgagcgattttcgttatgttgttgcttggacttcttaca
ccggcaagaactgatggggggtgtgtttgcagtggaaaatcccagtgtgactgtcatggc
atcaaaggtgatatgggtgagcctgggttgcctggctttgatggcgcgccaggaaaacca
gggcatcaaggaaatgagggcccttctggatatcctggtccaaaaggaaatatgggaatt
ccaggcatccccggacccaaaggttctaggggaactccggggacccctggattcttgggc
ccaccaggactacctgggttccctgggaaagagggacctaggggttctcctggtctccca
ggatgcaatggcacagagggtgaacctggtgcaccaggccttattggaatgatggggcgt
cctggtttgcagggatttccaggcatccagggacctaagggagatacatattacttccca
cccagtgatgcagtgaagggacgttgtggtcttccaggcagaaaaggagagaaaggtctg
ccagggttgccagggttaatgggaccagttggaccagaggggcctagaggtgcaacagga
atacaaggatttccagggatgcaaggagagaagggcctagagggtcgaagcatgggaata
cttgggcccagaggtcaaaagggtgagaagggtccacctggtataccagggcaaaaaggt
gtaaagttatttgtaacaggaccaaaggaacctaagggtgaccaaggtgaccctggagac
attggatgtcctggaccaattggtcgtcctggtcgtccaggtcccaagggggagaaaggg
gaaagaggggagcctggtggtccggggaaggctggaaaagatgggctgcaaggagagtct
ggccctaagggtgaacctggagatgttggatttcaaggggcaacaggaatagctggggaa
atgggtgcgaagggcgatcgtggcccccctggtctccctggagagttcattgtaatagat
agggaggtcaaaggtcaaaaaggttttcctggaccaccaggaccccctggtctccgaggc
agtgaaggtttcagtggctttcctgggaatccaggtcctccaggccttgccataccagga
cctaagggaccaccaggtccccctgggtttaggggtgagaaaggtgaaacaggagaacct
gcaccttacatcaccggaaccaaaggaattgatggactaccaggggaacgaggaccccct
ggtgaccctggccctccaggaactccaaatgtcaatagacgtgtgggactgcaaggtccc
aagggtgagaaaggcctaacaggacctaagggtctgtgtggagaccctgggaaaccagga
gagcaaggtgatctttgcaggctgtgcgctgtctctggtggtgaacctggaccaccggga
ccacctggagatcctggtacacctggagagccaggtgttaggggatttcaaggcattaaa
ggttcccagggtttccaagggccagagggtccacctggtcctccgggttcattaggtcct
ccaggctttcctggtcctccaggatccaaaggagacctagggaaaatatctgagattggg
gagaagggccagacaggaaactctggttttccaggaccatctgggacaaatgggaatgat
ggcataccgggcaaccctggcttcaaaggaccaccaggtccaaaaggaaacccaggttct
ccaggacctaagggaaaccatggagatcaaggacctagcggggagcctggccgcacaggt
ccaatgggtagccaggggtcaatgggtgtgggtcaaccagggatacccggagagaaagga
agtttgggagtagtgggtcggcaaggaaatcccggagaaccaggtgagaaaggatctcca
ggatcagtacaaatgacccctggagacccgggggaacctggacggcctggtccacctggt
ctaccaggacctccaggtaatgagggctgcgctggagttcaaggattccctggaccgtat
ggggtaaaaggagagaaaggactgtcaattcaaggaggacctggacttactggtcctaaa
ggtgataagggtgtgaaagggaggccgggtctacctggttttggaagtgcaggccgccct
ggccctccaggaccacctgggttaccaggatcaaagggggacatggcattcggcttccca
gggcccaagggtcggcaggggctgccaggagatgaaggggctcttggatcacctggaaac
tatggtccccctggattacctggatgtccaggtcaaagaggaagggatgggccaccagga
gactgtggtgcccgaggtcttgatggttcacctggagatgctggggttccaggatgctgt
attccaggagccaaaggtgacgaagggcccttaggaaccagaggactagacggaccctca
gggatgcagggactgaaggggtcacggggtgaaacgggaccatctggacagggtgtacct
ggtcaaacaggtatggctgggatgcctgggaaaaatggagcagctggattgattggtatc
cagggaccaaaaggtttcagaggtcgagatggctcaccaggttacccaggtccacgtgga
aatcagggggatcctggaagcatgggtccacctggagcagagggaaatcccggaccaccc
ggagctcctggacctaaaggtttaatgggtaggaatggagttccaggtgataaaggaaaa
ccaggggaaccaggagaccgtggagcctttggtccaaagggacagccaacaaacttcatg
tctccaggggatcctggtgaacttggcctaccaggtcttcttggtttaactggctctaaa
ggggaaccgggaatcccaggcaattatggggaatctggaaagaatggacttccagggagt
actggtccaccaggtcctcctggtgacccaggccagaaggggcttcctggaaatagaggt
cttgatggaaactttggttatccaggggttatagggttcccaggagtaaaaggcgataaa
ggtttgcctggagtacgtggggaggccgggactcctggtgtccctggacaaaatggacca
aagggcatcaaaggtgaacccagtcagccttggccagggcttccaggaccacctggcgag
aagggtgaaccaggtcatccagggagtaaaggggaaaagggtgacaagggtatatttggg
atcgctgggcccccaggtttgacagggtttcctggagtaagaggcgaaactggagtacca
ggaggtccaggacccccagggcctcctggtgataagggtttagatgggcttccaggtcca
actggatatcaagggccctgtggtccaccaggtgttcctggttcggctggagatcctgga
ccttcaggatccagaggagaccaaggcagagacggtattccaggaccatctggaacaaaa
ggagatagagggctcactgtaaatgggactccgggcccactgggtattaagggagaaaaa
ggtactaaaggcaatcctggaccccaagggccatgtgggccaccaggaccctacggacca
gagggagaaaagggccttccaggcctactcggaaaaccagggcctcgtgggtgtccaggt
ccagcgggcatctgtgttgatggtccaaaaggggagagaggaccttatggaccacctggc
ctgcaaggtctccagggtccacgtgggcctcctggtgacccaggtccagggttgaaggga
aataaaggtgaaactgggccccaggggcttagaggagggcccggttgcaccggtcacagt
ggagttccaggaggaccaggcagtgatggaggtcctggctgcaagggcccgaaaggagat
atggggcctatgggtgatgtcggaccaatcggtccaaagggaagctgtggtcctagtggc
cctcctggattaaaaggatataaaggatcacctggacccaaagggcctaaaggctgtgat
gctgtgggtgaggtcatcctgagcccaggagaccctggtttacctggagatgctggtgag
aaaggagagcaaggagatcctggacctccaggattaacaggtccacgaggaactcaaggt
cgaaagggagccacaggtctagatgggggtccgggaaggcctgggatccctggaccaaag
ggagacagtggcccaccagggcgacatggtgctcgaggtttgtcaggtgaagagggtccc
aaaggctctgtaggaccaaagggggcatttatgcagaatggcaccagagacagcttcctt
tttaccaggcatagtcagagaagtgacgtcccaacctgccctagtgaatcaagacatttg
tattttggatattcgctcctcttcatcattggcaataaccgtggacacgggcaggaccta
ggaactctaggaagctgtttgccgagattttccaccatgcctttcctggtctgtaaccct
gacgaaacctgtcgctacgcttctcgaagcgattactcctattggctgtcttcagacata
ccactgtccagcaacaaagctttgatctctggtgatttattggaacagtatatcagcaga
tgtgcagtatgtgaggcacctgctaatgtaatagcagttcacagtcagacaaatcagatc
ccacagtgtcctgctggatggctatctctgtggcaaggttactcctttgtgatgcaaaca
gctgcaggtgcagagggctccgggcagccgctggtctctcccgggtcctgtctggaagag
ttccgcaagattccattcatagagtgtcatgggcgtggcacttgtaacctttatgatgat
tcctacagctactggctggcatcgcttgaccctgagagaatgtttagtatgcctgtccgt
cagacagcaagacaacaagacatcatcagccgctgtcgggtctgtatgaagcagtag
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integrated database retrieval system
