Myxocyprinus asiaticus (Chinese sucker): 127431966
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Entry
127431966 CDS
T08782
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04382
Cornified envelope formation
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127431966
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127431966
09142 Cell motility
04820 Cytoskeleton in muscle cells
127431966
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127431966
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
masi04147
]
127431966
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127431966
Exosome [BR:
masi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127431966
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127431966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127431966
NCBI-ProteinID:
XP_051538661
LinkDB
All DBs
Position
1:complement(49971561..50054827)
Genome browser
AA seq
1679 aa
AA seq
DB search
MSINLKSLGALLLFLTLCIEVQRSESAACHGCGTGSKCDCSGVKGEKGERGFPGLSGQPG
VPGFPGPEGPIGPHGEKGDDGPSGPMGPKGIRGPPGLPGFPGTPGIPGLPGQDGAPGPRG
IPGCNGTKGERGFSGSPGLPGLEGQQGPSGYPGQKGEPGEVIEISRISDNGDPGIDGSPG
PRGDPGPPGLPGPIGPAGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGDRGLQGPPGP
PGQVGEVSGLPDTVIQQGEKGDRGLPGDAGFPGPPGPPGPQGGQKGEKGEPGDLGKRGKP
GKDGDPGDPGFQGDKGDSGFPGLPGRDGGRGEKGEPGPPGPPGFGGGPFPGGRGQKGERG
DPGSPGPKGDRGLPGFQGPPGPQGPPGIGGPGPAGPPGLPGERGDKGDEGQPGISLPGVP
GRPGFPGPQGLQGPPGPPGIFKGDQECPSGLPGLPGLQGERGFPGDVGQKGQKGETCVNC
FTSGNPVPGPPGFPGPPGNPGASGSPGPKGDRGFPGGPGIMGLPGIQGPQGSPGFPGEKG
DPGDAISVTGVKGDKGDTGFPGPPGLPGLEGRPGRDGVPGPPGLRGPPGSAFVKGAQGPP
GEPGLTGAPGDRGLPGPPGFGPQGPTGEKGIQGVSGRPGAPGAPGQKGEPGLAVSEKGER
GPPGRDGEPGFPGSPGNPGPPGQAGFPGLPGAKGEPGLPGFGLPGPSGAKGFPGIAGSPG
GPGVPGRPGLDGLPGQPGLPGPKGEPGFGLPGPSGPSGFPGSKGAPGPKGDPGFPGNPGA
PGRSGLDGAPGPKGDPGFPGGPGPLGPPGPPAFGLQGPPGPPGAPGPMGTPGVPGSNGEK
GDRGPPGPSIPGLQGDRGSPGVPGPPGLTGPPGSPGIPGQYGLPGLPGPKGDMGAMGAPG
PSGVPGNPGRIGFPGPKGDDGVQGQPGSPGFEGSKGDKGDPGLPGPPGQILSPNINKGQK
GEPGIPGFSGSPGAKGIPGLPGDAGFPGQDGRPGPPGPPGPKGDPGLPGNPGAPGMPGLK
GSMGEMGFPGVPGVKGNPGQTGRTGQPGSPGTPGFPGLKGDPGSAGYGLPGNPGPKGEPG
APGFPGTPGPKGQPGFPGPPGLTGSPGPKGDPGLPGFQGAPGIPGPKGLDGVPGPPGLNG
APGRPGDPGRSGQTGIPGDKGLTGRDGIPGPAGQKGEPGAPGLGGPGPPGFPGLPGSKGD
PGFPGPPGSPGFPGPKGEAGFPGLPGQTGPVGPPGPSGQPVQGPKGNQGPPGPPGRTGPP
GPEGPRGPAGSGGVKGEKGSPGFPGTPGAPGPKGDYGSPGFPGLPGPPGPSGLKGDIGPQ
GVPGFPGSKGQPGPAGSVGLTGDRGEVGDPGPPGDQVVAPAPIYLKGERGPPGPPGIQGS
RGPPGPQGLQGLPGSPGNPGDSGPMGPPGFTGSPGRKGDQGPSGQPGLRGYPGPPGPDGI
QGPPGFPGSSSAAHGFLITRHSQTTDVPLCPDNTNLIYDGYSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAPITGEGIKPFISRCAV
CEAPAMVIAIHSQTIQLPTCPQKWDPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
TPFIECHGRGTCNYYGNSYSFWLATVDLNEMFRRPQSETLKAGNLETRVSRCIVCMKRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaacttaaagagtctcggcgcattgttactgttcttaactctatgcatagag
gtgcagaggtcggagtctgcggcatgtcatggctgtggaacgggatcaaagtgtgattgt
agtggggtgaaaggagagaagggcgagcgagggtttccaggactatcaggtcagccaggt
gttccaggtttccctggaccagaggggccaattggacctcatggagagaagggtgatgat
ggaccttcaggaccaatggggccgaaaggaataagaggacctcctggattgccagggttc
ccaggaacaccaggaattccaggtctcccaggacaggatggtgccccaggacccagggga
attcctgggtgtaacggaactaaaggtgaaagaggattttcaggaagtccaggtcttcca
ggtttagagggtcaacaaggtccatctggttatccaggacaaaagggagagcctggggaa
gttatagaaatcagtcgcatttcagataatggggatcctggcattgacggttcgccgggc
cctaggggagatcccggacccccaggtttgccaggtcccatcggtcctgctggtccccgt
ggttatgagggtcgtccaggtcctcctggtccaccagggcccaagggaaacatgggattg
aacttccaaggaccaaaaggagagaagggtgatcgtggattgcaaggacctccagggcca
ccgggacaggttggcgaagtctcaggcttacctgacacagtcattcagcaaggagaaaag
ggggatcgtggcctgcccggagatgctggatttcctggcccccctggacctcctggccca
caaggtggccagaaaggtgagaaaggagagcctggggatctaggaaagaggggaaaacct
ggcaaagatggtgaccctggtgacccaggatttcagggtgacaagggagattcgggtttt
cctggtctgccaggtcgagatggtggcagaggtgagaaaggagaaccaggacctcctgga
cctccagggtttgggggcgggccattcccaggtggaagaggacaaaaaggagaacgtggt
gaccctggatcacctggtcctaaaggagacagaggacttccagggtttcaggggccacct
ggtccacaaggtcctccaggaattggaggtcccggtcctgccggtccaccaggtttacct
ggagagagaggcgacaagggtgatgaagggcagccaggaatctccctccctggggtgcct
gggagaccaggttttccaggtccccaaggtctccaaggacctcctggtcccccaggaata
ttcaagggtgatcaggaatgtcctagtggtcttcctggacttccaggcctgcagggggag
cgtggatttccaggagatgtaggacagaaaggtcaaaaaggagagacatgtgtgaattgc
ttcactagtgggaaccctgtccctggaccaccaggttttccaggtcctcctggaaatcca
ggtgcatctggatcgcctggtcctaaaggagacagaggattcccaggagggccagggatc
atgggcctacctggcatacaaggacctcagggttctcctggattccctggagagaagggc
gacccaggtgatgccatctctgttacaggtgtgaaaggggacaagggagacacaggtttt
cctggccctccgggtctgccaggacttgaaggaaggcctggtcgtgatggagtgcctggt
ccccctggcctcagaggaccacctggttctgcatttgtgaaaggcgcacaaggtccccca
ggtgaacctggcttgacaggtgctccaggagacaggggtctgcctggtcccccaggattt
ggtcctcagggtcccactggagagaaaggtatccagggagtttcaggaagaccaggggct
cctggagcaccaggtcagaaaggtgaacctgggctagctgtgtcagagaagggtgaacgt
ggacccccaggtcgggatggagaacctggttttccaggaagtccaggtaacccaggccca
cctggacaagctgggttcccaggcctacccggagccaaaggagagcctggtcttcctggt
tttggcttgccaggaccctctggtgctaaaggatttcctggtattgctggttcccctggt
gggcctggtgttcctggacggccaggattggacggactccctggtcagcctggattacct
ggacccaaaggagaacctggctttggtttaccaggcccttcaggtccttcaggattccca
ggcagtaaaggtgcacccggtcctaaaggcgatcctggtttccctggaaatcctggtgca
ccagggcgatcaggtcttgatggtgcccctggacctaaaggtgatcctggttttcctggt
ggtcctggtcctcttggtcccccaggaccccctgcctttggccttcagggcccccctggt
cctcctggagcacctggcccaatgggaactcctggagtccctggttcgaatggagagaag
ggagaccgtggcccccctggtccgagtattccaggattgcaaggtgacagaggaagccct
ggagtccctggacctcctggcctaactggtccacctgggagtccaggaatacctggtcaa
tatggccttcctggactgcctggacctaagggggacatgggtgcgatgggtgcaccagga
ccctcaggtgtccctggcaatcctggcagaataggctttcctggacctaaaggagatgat
ggtgtccaaggacaaccaggtagcccaggttttgaaggatcgaagggagacaaaggtgat
ccgggccttccaggcccacctggccaaatcttgtctccaaacataaataagggacaaaaa
ggagaacctggaattccaggttttagtggatcaccaggtgcaaagggtattcctggtctc
cctggagatgctggatttcctgggcaagatggacgaccagggccaccaggaccaccaggc
cccaaaggtgatcctggtcttccaggaaatccaggagccccaggaatgccaggactgaag
ggaagcatgggggagatgggattcccaggagttcctggagtgaagggaaaccctggccaa
actggccgaactggccagcctggatcaccaggaacaccagggttcccaggactaaaaggt
gatcctggctcagcaggatatggattaccaggaaatcctgggcctaagggtgaaccagga
gctccaggatttcctggaacaccagggccgaaaggccaacctggttttccaggacctcca
gggttgactggcagccctggacccaagggtgaccctggactcccaggattccaaggtgca
cctggcattcctggccctaaaggtttggatggagttccaggccctcctggtctaaatgga
gcacctggtaggccaggagatcctggccgatctggacaaaccggcatccctggtgataaa
ggtctgactggtcgcgatggtatcccagggcctgcaggacaaaagggtgaaccaggtgct
ccaggtcttggtggcccaggcccgcctggtttccccgggttaccagggtctaaaggagac
cctggctttcctggtcctccaggtagtcctggatttcctggtccaaagggtgaggcggga
ttccctgggttgccgggccaaactggtcctgtaggaccacctggcccttcaggccagcct
gtgcaggggcctaaaggtaaccaaggcccacctggtcccccaggaagaaccggtcctcct
ggccctgagggtccccgtgggcctgcaggtagtggaggagtgaagggtgagaagggctca
cctggatttcctgggacacctggtgcacctggaccgaaaggagattatggttcccctggt
ttcccgggtctgccaggtcctccaggacccagtgggcttaaaggagatattggacctcaa
ggagttcctggattcccaggatctaaaggacagcctggccctgctggttctgttggcctc
actggggaccgtggtgaagttggagatccaggacctcctggtgaccaagttgtagcgcca
gcccctatttatttgaagggggaacgtgggcctcctggaccacctggtatccaaggcagc
agaggcccgccaggtccccagggattgcagggtcttccaggttcacctggcaaccctggt
gactcaggtcctatgggacctccaggatttactggttcacctggaaggaagggagatcaa
ggaccatctggacaaccaggtctgcgtggttaccccggccctcctggtccagatggaatt
cagggccctccaggtttcccaggatcatcatctgcagcacacggttttctgatcacacgc
cacagccagaccactgatgtgccattgtgtcctgataacacaaacctcatttatgatggg
tattctttactctatgtgcagggcaacgagagggcacatggacaggacctgggtacggct
ggtagctgcctacgtcgttttagcaccatgcccttcatgttctgcaacatcaacaatgtt
tgcaactttgcctcccgcaatgactattcctattggctgtccacaccacagcccatgccc
atgagtatggcacccatcactggagagggcatcaaacccttcatcagtaggtgtgctgtg
tgtgaagccccagccatggtgattgctatacacagccagactattcagttgccaacctgc
ccacagaaatgggatcccctctggattgggtactccttcatgatgcacaccagtgcaggt
gctgagggctcaggtcaggctcttgcctctcccggatcctgtctggaggagtttcgctcc
actccattcattgagtgccatggtcgggggacctgcaattattacggcaactcctacagc
ttctggctggccactgtggacttgaatgaaatgtttaggaggccgcagtcagagacacta
aaagctggaaacttggagacccgcgtgagccgctgtattgtgtgtatgaagaggacgtaa
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integrated database retrieval system
