Myxocyprinus asiaticus (Chinese sucker): 127435197
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Entry
127435197 CDS
T08782
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masi03016
]
127435197
Enzymes [BR:
masi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127435197
Transfer RNA biogenesis [BR:
masi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127435197
Prokaryotic type
tRNA splicing ligases
127435197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
127435197
NCBI-ProteinID:
XP_051544429
LinkDB
All DBs
Position
45:31425427..31435136
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIGKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMS
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDVGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagctgcagtatctggataaaattggaaagaactgctgg
cggattaagaaaggattcgtgccgaatatgcaggtggagggagttttctatgtgaatgat
ccgctggagaaactgatgtttgaagagctgaggaatgcgtgtcgtggaggaggatttggt
ggcttcctaccagctatgaagcaaatcggaaatgtcgccgccctcccgggaattgtacat
aggtctatcggcttaccggacgtccactctggatatggtttcgccatcggaaacatggct
gcgtttgacatggacaaccctgaggcagtcgtctctcccggcggagtcgggtttgatatt
aactgtggcgtgcgtctgctgcggactaacctggacgagggcgacgtgcagccggtgaag
gagcagctggcgcagtccatgttcgaccacattcctgttggtgtcggatcgaaaggtgtc
attcccatgggtgctaaagatctggaggaagctctagagatgggtgttgattggtcgctg
agggaaggttacgcctgggctgaagataaagaacattgtgaggaatacggcagaatgctg
caggccgaccccaacaaagtctcatccaaagccaagaaaagaggcctgccacagttgggt
acactgggtgcaggaaatcactacgctgagattcaggttgtggatgagatttataatgag
tatgcagcgaagaagatgggcatcgatcacaagggtcagatctgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcaacagatgcgttggttgcaatggagaaagcg
atgaagcgagataagatcactgtaaacgaccgtcagttggcatgtgcgcgcatcacgtct
cctgagggtcaggactatctgaagggaatggctgctgctggaaactacgcctgggtcaac
cgctcatccatgacctttctcactcgacaggcgttctcaaaagtgttcaacacaacgcct
gatgatctggacatgcacgtcatctatgatgtctctcacaatatcgccaaagttgaggag
cacatggtggatggcaaacagaaaactcttctgatacacaggaagggctcaacgcgagcg
ttccctcctcaccatccgctgatccccgtagactatcagctgaccggtcaaccagtgctg
atcggaggcaccatgggcacctgcagttacgtactgacgggcacagagcagggcatgagc
gagacattcggcactacgtgtcacggagcgggtcgagcgctgtccagagccaaatccaga
cggaacctggacttccaggatgttctagataaactggcagaccagggcattgccatcaga
gtggcatcaccaaagttggtgatggaggaggcacctgaatcctacaagaatgtcacagat
gtggtgaacacgtgccatgatgtcggaatcagcaaaaaggccatcaagcttcgacccatc
gctgtcattaaaggttaa
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