Myxocyprinus asiaticus (Chinese sucker): 127436442
Help
Entry
127436442 CDS
T08782
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masi03016
]
127436442
Enzymes [BR:
masi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127436442
Transfer RNA biogenesis [BR:
masi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127436442
Prokaryotic type
tRNA splicing ligases
127436442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
127436442
NCBI-ProteinID:
XP_051546548
LinkDB
All DBs
Position
47:complement(1644441..1657679)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIGKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARIMS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataacgatgagctgcagtatctggataaaattggaaagaattgctgg
cggataaagaaaggtttcgtgccgaatatgcaggtggagggagtcttctatgtgaatgat
ccactggagaaactgatgtttgaagagctgaggaacgcgtgtcgcggaggaggatttggc
ggcttcctaccagctatgaagcaaatcggaaatgtcgccgccctgccgggaattgtacat
aggtctatcggcttaccggacgttcactctggatacggtttcgccattggaaacatggct
gcgtttgacatggacgaccctgaggctgtcgtctctcccggtggagtcgggtttgatatt
aactgtggcgtgcgtctgctgcggacaaacctggacgagggcgacgtgcagccggtgaag
gagcagctggcgcagtccatgtttgaccacattcctgttggagtcggatcgaagggcgtc
attcccatgggtgcaaaagatctggaggaagctctagagatgggtgttgattggtcgctc
agggaaggttacgcctgggctgaagataaagaacattgtgaggaatatggcagaatgctc
caggccgacccaaacaaagtctcgtccaaagccaagaagagaggcttgccacagttgggt
acgctgggtgcaggaaaccactatgccgagattcaggttgtggatgagatttataacgac
tatgcggcgaagaagatgggcatcgatcacaagggtcagatctgtgtcatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgcgttggttgccatggagaaggcg
atgaagcgagacaagatcacggtaaacgaccgtcagttggcttgtgcacgcatcatgtct
cctgagggtcaggactatctgaagggaatggccgccgctggtaactacgcctgggtcaac
cgatcatccatgacctttctcactcgacaggcgttctctaaagtgttcaacacgacacct
gatgatctggacatgcacgtcatctacgacgtctctcacaacatcgccaaagtggaggag
cacatggtggacggcaaacagagaactctactggtgcacaggaagggctcgacgcgagcg
ttcccccctcaccatccgctgatcgctgtagattatcagctgaccggccaaccagtgctg
atcggaggcaccatgggcacctgcagttacgtgctgacgggcacagagcagggcatgacc
gagacgttcggcaccacgtgtcatggagcgggtcgcgcactgtccagagccaaatccaga
cgtaacctggacttccaggacgttctagataaactggcagacatgggcattgccatcaga
gtggcatcaccaaagctggtaatggaggaggcacctgaatcttacaagaacgtcacagat
gtggtgaacacgtgccatgatgctggcatcagcaaaaaggccatcaagctccgacccatc
gctgtcattaaaggttaa
DBGET
integrated database retrieval system
