Myxocyprinus asiaticus (Chinese sucker): 127437564
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Entry
127437564 CDS
T08782
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127437564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
masi03000
]
127437564
03019 Messenger RNA biogenesis [BR:
masi03019
]
127437564
04121 Ubiquitin system [BR:
masi04121
]
127437564
Enzymes [BR:
masi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127437564
Transcription factors [BR:
masi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127437564
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127437564
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127437564
Ubiquitin system [BR:
masi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127437564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
DZR_2
RDD1
zf-C3HC4
Rtf2
Torus
Motif
Other DBs
NCBI-GeneID:
127437564
NCBI-ProteinID:
XP_051548519
LinkDB
All DBs
Position
48:15748140..15771517
Genome browser
AA seq
761 aa
AA seq
DB search
MSCSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADAEILKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVI
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKLNPNFLQISTCGEKSKSKPNSTQRPNSTNKEGWPSLQGYGKMVNGLPTEHRKSS
PLLDCLTDSDHMTPDEQDPEQVTDLSTGLPPFPSALEPNSPIDKPSEPISIGNGETISQT
SSSDSPSPPPGLTKPSLVMPISVAELTARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLP
PFSSSPQGASDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSVKQQQQDDDLGFDPFD
ITRKALADLIEKELSVQEHSHLSPNPSTHQTSLPNGQQRLSHLQHRGLYNSFSLPQHTAT
RHPWMGLPTRNNLTHLNHTAAHSHFLDLSMPARHHSTGLGGIPISENNGSLESINVKEWQ
DGLRALLPNININFGGLPNSTSSSSSTSSVNHIGVPVGTARVSHSLSWESTASWMDPAII
TGIPASTGNSLDCLHDDNPPHWLKSLQALTEMDGPPSSSALPQPPHAAHLSLHRAAWAPY
LPPPTLNPSQFHSPPPGFQTAFRPQAQTATDILQSAGIDRH
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcagtccagagctgaaagaagatccaatggagtgcccactgtgcatggaacct
ctggagattgacgatgtcaactttttcccctgcacctgtggctaccaaatctgccgtttc
tgctggcaccgtatccgtacagatgagaacggcctctgccctgcctgcagaaagccttac
ccggaggatccggcagtatacaagccgctgtcacaagaggaaatccagaggataaagaac
gagaaaaagcagaagcagaatgaaaagaaacagaaggtgacggagaaccgcaagcacctg
gccagcgtccgcgtggtgcagcggaacctggtgtttgtagtgggcctgtctcaaaggctc
gcagatgcagagattctaaagcgtccagaatattttggaaagttcggcaaaatccataaa
gttgtcatcaataacagcacgtcatatgcaggttcacagggtcctagtgccagtgcctat
gtaacttacattcgttcagaggacgcccttagagcaatacagtgcgtaaacaatgtcata
gtggatggtagaacactgaaggcttctttaggtacaacaaagtactgcagttattttctc
aaaagcatgcagtgtcctaaaccggactgcatgtatttacatgaattgggggatgaagca
gctagttttacaaaagaagagatgcaggcagggaaacatcaagagtatgagcaaaaactt
ctccaagacctttacaaattgaaccccaactttttacagatctcaacatgcggagagaag
tcaaaaagcaaacccaactcaactcagagacccaatagcaccaataaagaagggtggcca
tcattacagggctatggaaaaatggtaaacggtttacccacagagcatcgcaagtcctct
cctcttttagactgcctaacagactcggatcacatgactccagatgaacaagaccctgaa
caggtcacagatctgagcacaggcctcccacccttcccctcagccttagagccaaacagt
ccaattgacaaaccatcagaacccataagtataggaaatggggaaactatatcacagaca
tccagtagcgattccccatctcctccacctggccttaccaaacccagtctcgtcatgccc
atcagtgtggctgagctcacagcacgctcaccttttgagggggcagcagcagagtctcag
tcacttttctcagacaacagcaatttcaggcatcccaaccccattcccagcggcctgccc
cctttctccagttcaccacagggagcctcagactggcccatgactccagaaccacagagc
cttttcacctcagacaccatacctgtgtcgtcctccactgactggcaggcggccttcggt
tttggctcttcggtcaaacagcagcagcaagacgatgaccttggcttcgacccctttgac
atcacacggaaggccttggccgacctcatagagaaagagctgtcagtccaggagcactcc
catctttcacccaacccctctacccaccagaccagcctccccaatggccaacagcgcctt
tctcatctccagcacagaggcctctataactccttcagcctgcctcaacacacggctaca
cgccacccctggatgggcctccccacccgcaataacctcacacacttgaaccacacggcc
gcacacagccatttcttagacctgagcatgccggcccggcaccacagtactggtcttgga
gggattcctatatcagaaaacaatggctcgttggaaagcataaatgtgaaagagtggcag
gatggactgcgagcactcctgccaaatatcaacatcaactttggaggcctcccaaactct
acctcctcctcttcctcaacttccagtgtcaatcacattggggtgccagtaggcacggct
agagtctcacacagcctcagctgggaaagtacggccagttggatggaccccgccattatc
acaggtatcccagcatccacaggcaacagtttggactgtcttcacgatgacaatccgcca
cactggctcaagtcgttgcaggccctcacagagatggacggccctcccagctccagcgca
ctgccccagccccctcacgcggcccacctctccctacatagagctgcctgggccccatac
cttccccctcccacactcaaccccagtcagttccattccccacctccaggctttcagaca
gccttcagaccccaagcgcagaccgccacagacatcctacagagtgccggtattgaccgt
cactaa
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