Myxocyprinus asiaticus (Chinese sucker): 127441376
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Entry
127441376 CDS
T08782
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127441376
04518 Integrin signaling
127441376
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127441376
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127441376
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127441376
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Pur_ac_phosph_N
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
Interfer-bind
DUF4998
Fn3_ROS1
DUF7949
DUF7359
Motif
Other DBs
NCBI-GeneID:
127441376
NCBI-ProteinID:
XP_051554683
LinkDB
All DBs
Position
5:37798966..38051962
Genome browser
AA seq
1350 aa
AA seq
DB search
MWGCTMAIQVSVVSLALLFFGVQAVPNPTSKLVRTTRVRRQAPDGEGLSSNQTQPMIFNH
VYNINVPLESLCSVDLDTVPGPETKGPPGSDKMPTEYTEEILDSDSQVTFTHRINIPKQA
CACPAAATMQQLANRIEMLEREVSVLRAQCSSSCCGESSVMGHLDFVPQCGSHGTFSMEI
CGCLCEEGWMGKNCSEPRCPDDCSGQGICIEGECVCDRNFGGENCSEPRCPGDCSDRGLC
IDGECVCEEAYAGKDCSLGRCLNDCSDQGSCVNGTCQCRPGFMGEDCSLIFCANNCSQKG
VCKDGFCACQEGYTGDDCASVSPPINLRVRGVSEHTIDLDWEGSRILTDFLITYTPTTPG
GVQLEIRVPGNITNTTIKGLEPGLEYKINVYAVINDIISSPMNTLVSTYLSNPDGLLFKS
VMETSVEVQWQPLDYLFDGWEISFIPKDNDGGMTAQLPSTITSFNQTGLRPGEEYTVNLV
ALKDQGRSQPVTSTVITLIDGPSQLIVRDVSDTVAFVEWTPPKAKVDQIILRYGLEGVDG
PKTIFRLQPTLSQYSLQVLRPGSTYEVLVSGVRNGNESGAISTKFATEIDAPKNLRVLSK
TSTSLELEWDNSEADVEGYSVVYSTLAGDQYDKVIVPHNDGATTKTALTDLLPGTEYGIG
ISAVLGASQSTPATMNARTGLDVPLDLTVTASTDNTITLLWGMVQGPIDHYRVTYTSSTG
VTTEHTVPKDITTTTLTGLEPGTEYTITVAAQRGRQQSTAATIDAFTGFRPITQLYFSDV
TSDSLTVTWSAPAPPADAFILNYSAQDSSDDSEIALDGSKTRITLTGLLPSRQYTVTLVT
MHGNVTSKAVVSSVTTGMDPPRDMTVLYVTEESVTLSWIQPLAAFDYYKMSYQSPKGRMD
NVVIDSDVTNYTLTSLHPATEYEIKLNTVRGSQESKIITTTVFTALDMPMELTALNVTPQ
GALLRWNPPVSSVDNYVLTLTRNQVTADTFLVEGNKQEYQLSQLIPSTTYSVVLYATKGP
LTSGTAIANFVTPMDAPQNLTASEVNHRSALISWQPPITDIDNYMLTYKAADGSRKELIL
DAEDTWIRLEGLAETTEYTVRLQAARGLQTSAIVSTSFTTGNRLFPTPQNCAQHLLNGEN
LSGIYTIYINRDLSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRKWSDYKIGFGNLEDE
FWLGLDNVQKIAAQGRYELRIDMKDGEESVYANYDRFSIGDSKSLYKLRIGDYNGTAGDS
LSYHQSRPFSTMDKDNDIAVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWK
GHEFSIPFVEMKMRPFNYRSISGKRRRSTH
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtgggggtgtaccatggcgatacaagtttcagttgtgagcctggctctactgttcttt
ggagttcaagctgtacctaacccaaccagcaaactagtgaggaccacgcgggtgaggcga
caggctccagatggcgagggtttgtctagcaaccagacccagcccatgatcttcaatcat
gtatacaacatcaatgtacctttagagtcactgtgctctgtggacctggacacagtacca
ggcccagagacaaaaggtccacctggcagtgacaagatgccaactgagtacacggaagag
attctggactcagacagccaggtgaccttcacccaccgcatcaatatcccaaagcaggcc
tgtgcttgtcctgcggctgccaccatgcaacagctggctaaccgtatagagatgttggag
agggaggtgtctgtgcttcgagcacagtgtagctccagctgctgtggagaaagctctgtc
atgggtcacttggactttgtccctcagtgtggcagccatggcaccttcagcatggagatt
tgtggatgtctgtgtgaagaaggctggatgggcaagaactgctctgaacctcgctgccca
gatgactgctccggccagggcatttgcatcgaaggtgagtgtgtatgcgaccgtaacttt
ggcggtgagaactgctccgagcctcgctgtccaggtgattgctctgacagggggttgtgc
atcgatggcgagtgcgtttgtgaggaagcctatgccgggaaggattgctcgctgggcaga
tgcctgaacgactgctcagatcaaggatcctgtgtgaacggaacctgccagtgtcgaccc
ggcttcatgggggaggactgctctctcatcttttgtgccaacaactgcagccagaaaggc
gtgtgcaaggacgggttctgtgcctgccaagagggctatacgggagatgactgcgcttca
gtgtcacctcctataaatctgcgagtccgaggggtgtctgaacataccattgatctggac
tgggagggatctaggatcctgacagacttcctgatcacatatacccctacaacccctggt
ggagtccagctagagatcagagttccaggaaacattaccaacaccaccatcaaagggttg
gagcccggtctggagtacaaaatcaatgtgtatgcggtcatcaatgacattatcagctca
ccaatgaacaccttggtctcaacctatctctcgaatccagacggtttactcttcaaatcc
gtcatggagacatccgtggaggttcagtggcaaccgttagactacttgtttgatggttgg
gaaataagcttcattcccaaggacaatgatggagggatgacagcacagctgcccagtacc
atcacatccttcaaccaaacagggctgaggcctggagaagagtacactgtcaacctggtg
gctttgaaagaccaaggcaggagccagccggttacctcaactgttatcacattaatcgat
ggaccatcacagcttattgtacgagatgtctcagacacagttgcatttgtggagtggacc
ccacccaaggctaaagttgatcagattatattgcgttatgggctggaaggagtggacgga
ccaaagaccatctttcgcctgcagcctactctaagccagtactccctccaagtcctgagg
cctgggtccacatatgaagtattagtcagtggagtccggaatggcaatgaaagtggagca
atatcaacaaaatttgctacagaaattgatgcaccaaagaacttacgagtgctatcgaaa
acatccaccagtctggagctggaatgggacaatagtgaggcagatgttgagggttacagt
gtggtttacagcacattggctggagaccagtatgacaaggtcatcgtcccacacaatgat
ggagccaccaccaagactgccctcactgatttactgcctggcacagagtatggcataggt
atttcagctgttcttggtgccagccaaagcacccctgcaacaatgaatgctagaactggt
ctggatgtcccattggatttgactgtcacagcctccacagacaacaccatcacactgttg
tggggcatggtgcaggggcctattgaccactatagggtgacctacacctcttccaccgga
gtcactactgagcacacagtgcccaaagacataaccaccaccacattgacaggtctagag
ccaggcacagagtacaccattacagttgcagcacagagaggcaggcagcagagcactgca
gccactattgatgccttcacagggttccgccctatcacacaactctacttctctgatgtg
acatctgattcattgactgtgacttggagtgctccagccccgcctgctgatgcattcatc
ttgaactacagtgcccaggactccagtgatgattctgagattgctctagacgggtccaaa
accagaatcaccctcactggtctcctgccctccaggcagtacactgttacacttgtaacc
atgcacggcaatgtgacatcaaaagcagttgtcagttcagtcacaacaggaatggaccct
cccagagacatgactgtgctgtacgtcaccgaggaatctgtgaccctgtcatggattcag
cccctcgcagcctttgattactacaaaatgtcataccaatcaccaaaaggtaggatggac
aatgtagtgattgacagtgatgtcaccaactacacactgaccagcctccatccagcaaca
gagtatgagatcaagctgaacacagtgagaggaagccaagagagcaagatcatcaccaca
actgttttcacagccttggacatgcctatggagctcacagccctaaatgtcacaccccag
ggggctctgctgcgttggaaccctcctgtctccagtgttgataactatgtgctcaccctc
acccgtaaccaagttacagcagacacctttctagtggagggtaacaagcaggaataccag
ctgagtcagctcattcccagtaccacctactcagtagtcctctatgcgactaaaggccct
ctcaccagtggcactgccattgccaactttgtcacacccatggatgcaccacagaacctg
acagccagtgaggtcaaccaccggagtgcccttatatcctggcaaccacccatcacagac
atcgataattacatgctgacctacaaagcagcagatggcagtcgaaaggagctgatttta
gatgcagaggacacatggatccgtctggagggactggcagagaccactgaatatactgtg
agactgcaagctgcaagaggattacagaccagcgccattgtttcaacctcttttacaaca
ggaaaccgattgtttcccacgccacagaactgtgcacagcacctcctgaatggagagaac
ctgagtggaatctacaccatctacatcaacagagacctcagtcaaggtgtgcaggtctac
tgcgacatgaccaccgatggaggcggctggatagtgttccagcgacgtcaaaacggtttg
actgatttctccaggaagtggagtgactacaagattggctttggcaacctggaggatgag
ttctggctcggcttggacaacgttcagaagattgcagctcaaggacgttatgaactccgc
attgacatgaaagatggcgaggagtcagtatatgccaactatgaccgattttccattgga
gattccaagagcctctacaaactgaggataggagattataacggcactgcaggtgactct
ctgagctaccaccagagcagacctttctctaccatggacaaggacaatgacattgctgtc
accaactgtgccctgtcctacaagggagcctggtggtacaaaaactgtcatcgggccaac
ctcaatggcaaatatggagagtccagacatagtcagggtataaactggtatcactggaaa
ggccatgagttttccatcccatttgtggagatgaagatgagaccgttcaactaccgcagc
atcagcggcaagcggaggaggtccacccattaa
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integrated database retrieval system
