Myxocyprinus asiaticus (Chinese sucker): 127441438
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Entry
127441438 CDS
T08782
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03013
Nucleocytoplasmic transport
masi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127441438
03015 mRNA surveillance pathway
127441438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127441438
Enzymes [BR:
masi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127441438
5.6.2.5 RNA 5'-3' helicase
127441438
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127441438
mRNA cycle factors
Common to processing body (P body) and stress granule
127441438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127441438
NCBI-ProteinID:
XP_051554829
LinkDB
All DBs
Position
5:complement(53646290..53691536)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETILECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPSYLGQVNGPATGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMSSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcaaacgctcaccttcctggacacggaggaa
gcggagttgctcggggccgacacgcagggctccgagttcgagtttaccgacttcacgctg
cccagtcagacacagacgcagggccagacccaaagccaactggacaatcaggtgaacggg
cctgatggagttctgcccaatggagaggatgcagtggtgaagaccagtcaacttttggcc
gagctgaactttgaagaggatgaggaagatacctactacactaaagacctgccagtgcac
gcctgcagctactgtggcattcatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaatggccgtggaaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgaccctgcacaaagacggcccacttggcgagaccattctg
gaatgctataactgcggctgccgtaacgtcttcctcctcggcttcatcccggctaaagcc
gattctgtggtggtgcttctgtgcaggcagccgtgtgcgagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcattcaggaccgctgtttcctgtcctgg
ctggtgaagatcccgtctgaacaggagcagctgagagcccgtcagatcaccgctcagcag
atcaacaagctcgaggagctctggaaggaaaacccaacagcaactctggaggatttggag
aaacctggagtagatgaggaacctcagcatgttctacttcgctatgaagatgcctaccag
taccagaacatttttggcccactcgtgaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtaaggtgggacttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcagggagat
gagatctgtttgcgctataaaggagacatggctccactctggaaaggcattggacacgtc
atcaaagtaccagacaattatggagacgagatcgccatcgagctgcgcagcagtgcggga
gcgcctgtggaggtgccacataacttccaggtggattttgtctggaaatcgacatctttt
gaccgtatgcagagcgctctgaagacgtttgctgtggacgagacctccgtgtctggttac
atctatcataagctgttaggtcatgaagtggaggatgttatcattaaatgccagctgccc
aaacgcttcactgcgcagggtctgccagatctcaaccactcacaggtttatgctgtgaag
acagtactccagagacctcttagtctcatccaagggcctccaggaactggcaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccgagtaacatcgctgtggaccagctcacagagaagatccatcagacgggactgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgactcgccagtgtcgttcttggcc
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaagacgagaccggcgagctgtcatcttctgacgagaaacgctaccgagctctcaaacga
acagctgagagagagctgctcatgaacgcggacgtgatctgctgcacgtgtgtgggtgcg
ggcgaccctcggctggctaagatgcagttccgctccattctcatcgatgagagcacgcag
gccacggagcctgagtgcatggtgccagtggtgcttggggccaaacagttgattctggtt
ggtgatcactgtcagctgggtccggtggtgatgtgtaagaaagcagctaaagcaggtctg
tctcagtctctgtttgagcgtctggtggttctgggcattagaccgatccgtctgcaggtg
cagtaccgcatgcaccccgcgctcagcgctttcccttcaaacatcttctacgagggatct
ctgcagaacggagtcaccgcagctgatcgcatcaagaaaggttttgacttccagtggcct
cagccagataagcccatgttcttctacgtgactcaaggccaggaggagattgcaagttct
ggcacctcctatctcaacaggactgaagctgctaatgtggagaagatcaccacgcgtctg
ctgaaggccggagccaaacctgatcagattggcatcatcacaccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactctaccaggaa
gtggagatcgccagcgtggatgccttccagggcagagagaaagacttcatcattctgtct
tgcgtcagagctaacgaacaccagggaatcggcttccttaatgacccacgccgtctcaat
gtggcgcttaccagagccaggtatggtgtgatcattgtgggcaatcctaaagcgctgtct
aaacaaccgttgtggaaccacctgctcaactactataaagagcagaaagttctggtggag
ggaccactgaataacctgagagagagtctcatgcagttcagcaaaccacgcaagctcgtc
aacaccatcaatcctggagctcgtttcatgagcactgccatgtatgatgcgagagaggcc
atgattcctggatccgtgtatgatcgcagcagcaccggacgtccatctaatatgtacttc
cagactcatgatcaggttggaatgatcgggacggggccgaaccccatgggctccatgaac
ataccgatcccattcaacctggtcatgccgcccatgcctccacccagttacctgggccag
gtgaacggaccggccactggtcgtggtgctcctaaaggcaagaccggaggtcgtggaggt
cgtcagaggaaccgtggcaccggtaaccatggcagcgggcaggccaacatgtcgagcagt
caggccagtcaggatctggtatctcagcccttctctcagggtcctctgacccagggctac
atcaccatgagccagccatcacagatgagccagcctggactctctcaacctgagctgtca
caggacagttacctgggggacgagttcaaatcgcagatggatgtggcgctctcgcaggat
tccacctatcagggtgaacgggcataccaacacggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
