Myxocyprinus asiaticus (Chinese sucker): 127442216
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Entry
127442216 CDS
T08782
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127442216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127442216
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127442216
mRNA cycle factors
Common to processing body (P body) and stress granule
127442216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
127442216
NCBI-ProteinID:
XP_051556038
LinkDB
All DBs
Position
6:37374354..37410196
Genome browser
AA seq
1173 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEIK
TKWSVSDFIKAFIKFHGHVYLSKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFSNEADEHSYSSDEQISWIQLLGLFMSFLGVMLSRALLNKNREEIMGECPL
PAIKVSLDWLRLRPSVFNESAVDKRQYIWPWLVSILNSFQPKEEDVSNASVIPLPEEFEL
QGFLALRPALRMLDFSKGHQGIVVGKESLLVHARHQRLISLGKLVADNQPRLIQCRISDG
LVLFITDIPEMVVEEPQEKDTPVLQESSNGEQTPNDSTQGLKSVLSVGKNQNSGLDGSER
PVVTFKENIKPREQSREQNRNQHQRDAGKDRAGFNKGNGIQGKSEQKKEGKRKSEVKKNS
HDKAIDAGKQVKTQNEIRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFP
PPAYVIPPPVAFSMSPGFTFPTGVSVPAPFLQASHPQSANQVQTGKPSHIPYSQQRPSGP
GALNQGPPQPQQTQPPPPQPSQQALQQSVQLQVQQQQQQQQQQQSPTKQSSQLSKSPPHH
HGMQQPYMQVPEQAGQMWSQHQTPAAMQKMPMQIPVKQPFFMPTQDPMKLFEHPMSMQPP
QPSMDKKMKFPEVKVQDFYWEPSYHMGVEGRAGMGDRMGKRQPGIFCPDQENMPRGPQYE
DNKSSPLLPPDLLKTLADFEEEEELLFTKPHDFYQALAGPLSSAPGRNIFLPNQSRLDSG
TDVIGQSSLLPRFSIPESYQNNSIFSEAYGKNMAPASKPDTPMMHQEPSLYSLFEGTPWS
PSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHASLPFSNFGPIGTPDSRDRRGPDRWK
AEKTGISGFGLDYLPSASSSTMPETNSWHQGVPTSSWAAQDMPMEDSSSVLLDSFKSIWS
SSMMQPGPSALEQLLMQQKQKQQRGHGNMNPPH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatacttacggcaggcagaggccctgaaggctgacatgacggat
tccaagcttggtgcagcggaggtctggacatcacgacaggctcttcaggacttataccag
aaaatgctggtaacagacctggagtatgccctggacaagaaagtggaacaagatctctgg
aaccatgcttttaagaatcaaataacaacactacagagtcaagctaagaacagggccaac
cccaatcgaagtgaagtgcaggccaatctctccctgtttcttgaggcagctagtggattc
tatacacaattattgcaggagctgtgcacagtgtttaatgtggacttgccttgccgtgtg
aaatcatctcagcttggcatcatcagcaataaacagagcagcaccagtgccattgtgaag
ccccagcccagctcctgttcttacatctgccagcactgtctcgtccatcttggagatatt
gcgcgttatcgcaaccaaaccagccaagctgagtcatactacagacatgcagctcaactc
gttccctcaaatggtcaaccttacaatcaactcgccatactggcctcctctaaaggagac
cacctcacaacgatcttctactactgcaggagcattgctgtcaaattccccttccctgct
gcctctaccaatctacaaaaagctctttccaaagctcttgagagccgtgatgagatcaaa
acaaaatggagcgtgtctgatttcattaaggccttcatcaagttccacggccatgtttat
ctcagcaaaagcctggacaagctcaataccctgagagagaaacttgaggagcagttccag
agactgattctccaaaaagccttcagctctcagcaactggtccacatcacggtgataaac
ctgtttgaactgcaccacctcagagacttcagcaatgaggcagatgagcacagctacagc
tcggatgagcagatcagctggatccaactcctcggcctcttcatgtctttcctgggtgtg
atgttaagccgagcattactcaataagaaccgtgaggagatcatgggggagtgccctctt
cctgccatcaaagtgtccctggactggttgaggcttcgacccagtgtgtttaatgaaagt
gctgtggacaagcgacagtacatctggccatggctggtgtccattttgaacagctttcag
cccaaagaggaggatgtgtcaaatgcctcagtgattccacttcctgaggaatttgagctg
caaggctttttggccctccggcctgctttacggatgctagacttctctaaagggcaccag
ggtatcgtggttggcaaagagagcctattagttcatgccagacaccagagactcatcagc
ctgggcaagttggtggctgacaaccaaccgcggttgatccaatgtcgcattagtgatggg
cttgtgcttttcattactgatatccctgagatggtggtagaagagccacaagaaaaggac
acacctgtccttcaggagtcatctaatggtgagcaaacacctaacgacagcacccagggc
ctgaaatctgtcctatcagttggaaagaaccagaacagcggactggatggcagcgagagg
cctgtggtcaccttcaaagagaatatcaaacctcgtgagcagagcagagaacagaaccga
aaccagcaccagagagatgcagggaaggacagagctggatttaataaaggaaatggaata
caagggaaaagtgaacagaagaaagaaggaaagaggaagagtgaggtgaagaagaacagt
catgataaagcaatagatgctgggaaacaggtgaagactcaaaatgagataaggaagact
ccagtttctgaagcgaggaagactccggtcacacagacgcaaaccacatgctcttctcag
tttatccccatacaccacccaggagcttttccccctctgcccagcagaccaggtttcccc
ccacctgcatatgtgatccctcctcctgtggcgttctccatgagcccaggctttaccttc
cccacaggtgtatccgtacctgcacccttcctccaggcctcccaccctcagtctgccaat
caagtgcagaccggaaaaccctcacacattccttacagccagcagaggccctcgggccca
ggagccctaaaccaaggccctccccaacctcagcagacacagcctccccctccacagcca
tctcagcaggccttgcaacagtctgtgcagctccaagtacagcagcagcagcaacaacaa
cagcagcagcagtcgccaactaaacagagctctcagctcagcaagagtccaccccatcat
cacggcatgcagcagccttacatgcaggtgcctgaacaagctggtcaaatgtggagccag
caccaaactccggccgccatgcagaaaatgcccatgcagataccagtcaaacagcctttc
ttcatgcccacccaggacccaatgaagctctttgaacaccccatgagcatgcagccccct
caacccagcatggacaagaagatgaagtttccagaggtgaaagtgcaggatttctactgg
gagccgtcgtaccacatgggagtagagggcagagccggaatgggagacaggatgggcaaa
cgacagcctggaatcttctgccccgaccaggagaacatgcccagaggcccgcaatatgaa
gacaacaagagctcccctcttctgcccccagacctgttaaagactctggcggactttgag
gaggaggaggagctgctctttactaaacctcatgatttctaccaggctttggctggccct
cttagctctgctcctggaaggaacatctttttgccgaatcagtcaaggctggacagtggc
actgatgtgattggtcagtcctctcttctcccacgtttttccattccggagagctaccag
aacaacagcatttttagcgaggcctatggtaaaaatatggcccctgcttctaaaccagat
acccccatgatgcaccaggaaccctccctctactccttgttcgaaggaactccatggtcc
ccttccctgcctgctagctcagatcactcgacaccagccagtcagtcacctcactcttcc
aaccccagcagcctaccctcatcccctccaacccacagccacgcctccctacccttctcc
aactttggccccatcgggacgcccgacagcagagaccgcagaggacctgaccgctggaag
gcagagaagactggtataagtggctttgggttggactacttgccttctgcttcatcctct
accatgccagagacaaacagctggcaccagggggtgccaaccagcagctgggcagctcag
gacatgccaatggaagattcctcctctgtcctcctcgacagtttcaagtcaatctggtca
agctctatgatgcagcctggcccatctgcgctggagcagctcctgatgcagcagaaacag
aagcagcagcgcggccacggcaacatgaacccgccacactga
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